Locus 6310

Sequence ID 3L_DroMel_CAF1
Location 16,843,759 – 16,843,854
Length 95
Max. P 0.833252
window10123

overview

Window 3

Location 16,843,759 – 16,843,854
Length 95
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 75.69
Mean single sequence MFE -40.70
Consensus MFE -24.48
Energy contribution -24.62
Covariance contribution 0.14
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.60
SVM decision value 0.72
SVM RNA-class probability 0.833252
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16843759 95 + 23771897
CGCAUUCUCCGGGCAGAUUUGUGCCCGUGGGCGUGGCCAAGCCCAUGCCCACCACGGAGUACUAUGCGCAAAGACUGCUCGCGAAUAGAACCAGC-----------------
.((((.(((((((((......)))))((((((((((......))))))))))...))))....))))(((.....))).................----------------- ( -40.90)
>DroVir_CAF1 34432 97 + 1
CGCACUCGCCGGGCCGCCUGGUGCCGGUGGGCGUGGCCAAGCCCAUGCCCACAACGGAGUACUAUGCGCAGCGGCUCUUGGCCAGCAGCGU--------UGCGCG-------
...((((((((((...))))))....((((((((((......))))))))))....)))).....(((((((((((.......)))..)))--------))))).------- ( -46.60)
>DroGri_CAF1 30811 97 + 1
CGCAUUCGCCGGGUCGCUUGGUGCCGGUGGGCGUGGCCAAGCCCAUGCCCACCACAGAGUAUUAUGCGCAGCGUCUCCUAGCGAGCAGCCU--------GGCGCG-------
......((((((((.(((((.((..(((((((((((......)))))))))))...(((....((((...))))))).)).))))).))))--------))))..------- ( -48.50)
>DroSec_CAF1 32996 95 + 1
CGCAUUCUCCUGGCAGAUUUGUGCCCGUGGGCGUGGCCAAGCCCAUGCCCACCACGGAGUACUAUGCCCAAAGACUGCUAGCGAAUAGAACCAGC-----------------
.(((.(((...((((.....((((((((((((((((......))))))))))...)).))))..))))...))).))).................----------------- ( -36.40)
>DroYak_CAF1 33360 95 + 1
CGCAUUCUCCCGGCAGAUUUGUGCCCGUGGGCGUGGCCAAGCCCAUGCCCACCACCGAGUACUAUGCCCAAAGACUGCUGGCCAAUAGAAGCAGC-----------------
.((.((((.(((((((.((((.((..((((((((((......)))))))))).((...)).....)).))))..))))))).....))))))...----------------- ( -35.90)
>DroAna_CAF1 32103 106 + 1
CGCACUCGCCCGGCAGAUUCGUGCCCGUGGGCGUGGCCAAGCCGAUGCCCACUACGGAGUACUACGCCCAAAGAUUGCUGGCCACCAAUCCCAGCCGAC------CGCCCGU
......((..((((.((((.(((.(((((((((((((...))).))))))))...((.((.....))))..........)).))).))))...))))..------))..... ( -35.90)
>consensus
CGCAUUCGCCGGGCAGAUUUGUGCCCGUGGGCGUGGCCAAGCCCAUGCCCACCACGGAGUACUAUGCCCAAAGACUGCUGGCCAACAGAACCAGC_________________
...((((....((((......)))).((((((((((......))))))))))....)))).....((.............)).............................. (-24.48 = -24.62 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:20 2006