Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,870,568 – 1,870,669 |
Length | 101 |
Max. P | 0.647807 |
Location | 1,870,568 – 1,870,669 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 73.62 |
Mean single sequence MFE | -32.39 |
Consensus MFE | -14.33 |
Energy contribution | -15.25 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.19 |
Mean z-score | -1.86 |
Structure conservation index | 0.44 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1870568 101 + 23771897 AAG---------GGGCUGUGUGGCAUCCACCACCAG-----CAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGACUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA ..(---------((((((.((((......)))))))-----)............((((...((((......)))).))))..)))........(((((((((...))))))))). ( -36.20) >DroSec_CAF1 10506 106 + 1 AAG---------GGGCCGUGUGGCAUCCACCACCAACUUACCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA .((---------((((((.((((......)))))..(((((...............)))))((((......))))))))))).((.....)).(((((((((...))))))))). ( -34.16) >DroSim_CAF1 10698 106 + 1 AAG---------GGGCCGUGUGGCAGCCACCACCAACUUACCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA .((---------((((((.((((......)))))..(((((...............)))))((((......))))))))))).((.....)).(((((((((...))))))))). ( -34.16) >DroEre_CAF1 10356 82 + 1 AAG---------GCGCCGUGUGGCUGUGGAUGCCA-----CCAGCUUUCGCAAAAAGUAAGCGCGUAAA-------------------AUGGAUGGCAGCUGGAAGGGCUGUCAA ...---------((((.(.(((((.......))))-----)).((((.(.......).))))))))...-------------------.....((((((((.....)))))))). ( -28.60) >DroYak_CAF1 10649 100 + 1 AAG---------GGGCCGUGUG-CCGUGGAUGCCA-----CCAACUUUCGCAAAAAGUAAAUGCUCAAAAAAGCGGGCUUCUCCCAAUAUGGAUGGCAGCUGGAACGGCUGUCAA ...---------.((((((...-(((.(..(((((-----((((((((.....)))))....(((......)))(((.....)))....))).))))).)))).))))))..... ( -31.20) >DroAna_CAF1 13489 102 + 1 AAGCAGAGGCCUGUGCUGUGUGGAUGCCA------------CAGCUUUCGCAAAAAU-CUGCGGACUCUAAAGCGGACUUCUCCCAAGAUGGAUGGCGACUGUAAAGGCUGUCAA ..(((((((.((((((((((.(....)))------------)))).((((((.....-.)))))).......)))).))))).((.....))...))(((.((....)).))).. ( -30.00) >consensus AAG_________GGGCCGUGUGGCAGCCACCACCA_____CCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA ...............((((........................(((((.....)))))...((((......)))).............)))).((((((((.....)))))))). (-14.33 = -15.25 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:12 2006