Locus 631

Sequence ID 3L_DroMel_CAF1
Location 1,870,568 – 1,870,669
Length 101
Max. P 0.647807
window969

overview

Window 9

Location 1,870,568 – 1,870,669
Length 101
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 73.62
Mean single sequence MFE -32.39
Consensus MFE -14.33
Energy contribution -15.25
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.44
SVM decision value 0.24
SVM RNA-class probability 0.647807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1870568 101 + 23771897
AAG---------GGGCUGUGUGGCAUCCACCACCAG-----CAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGACUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA
..(---------((((((.((((......)))))))-----)............((((...((((......)))).))))..)))........(((((((((...))))))))). ( -36.20)
>DroSec_CAF1 10506 106 + 1
AAG---------GGGCCGUGUGGCAUCCACCACCAACUUACCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA
.((---------((((((.((((......)))))..(((((...............)))))((((......))))))))))).((.....)).(((((((((...))))))))). ( -34.16)
>DroSim_CAF1 10698 106 + 1
AAG---------GGGCCGUGUGGCAGCCACCACCAACUUACCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA
.((---------((((((.((((......)))))..(((((...............)))))((((......))))))))))).((.....)).(((((((((...))))))))). ( -34.16)
>DroEre_CAF1 10356 82 + 1
AAG---------GCGCCGUGUGGCUGUGGAUGCCA-----CCAGCUUUCGCAAAAAGUAAGCGCGUAAA-------------------AUGGAUGGCAGCUGGAAGGGCUGUCAA
...---------((((.(.(((((.......))))-----)).((((.(.......).))))))))...-------------------.....((((((((.....)))))))). ( -28.60)
>DroYak_CAF1 10649 100 + 1
AAG---------GGGCCGUGUG-CCGUGGAUGCCA-----CCAACUUUCGCAAAAAGUAAAUGCUCAAAAAAGCGGGCUUCUCCCAAUAUGGAUGGCAGCUGGAACGGCUGUCAA
...---------.((((((...-(((.(..(((((-----((((((((.....)))))....(((......)))(((.....)))....))).))))).)))).))))))..... ( -31.20)
>DroAna_CAF1 13489 102 + 1
AAGCAGAGGCCUGUGCUGUGUGGAUGCCA------------CAGCUUUCGCAAAAAU-CUGCGGACUCUAAAGCGGACUUCUCCCAAGAUGGAUGGCGACUGUAAAGGCUGUCAA
..(((((((.((((((((((.(....)))------------)))).((((((.....-.)))))).......)))).))))).((.....))...))(((.((....)).))).. ( -30.00)
>consensus
AAG_________GGGCCGUGUGGCAGCCACCACCA_____CCAACUUUCGCAAAAAGUAAGCGCUGAAAAAAGCGGGCUUCUCCCAAAAUGGAUGGCAGCUGGAACGGCUGUCAA
...............((((........................(((((.....)))))...((((......)))).............)))).((((((((.....)))))))). (-14.33 = -15.25 +   0.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:12 2006