Locus 6308

Sequence ID 3L_DroMel_CAF1
Location 16,827,719 – 16,827,828
Length 109
Max. P 0.999933
window10121

overview

Window 1

Location 16,827,719 – 16,827,828
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 96.15
Mean single sequence MFE -43.38
Consensus MFE -41.86
Energy contribution -41.42
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -2.60
Structure conservation index 0.96
SVM decision value 4.65
SVM RNA-class probability 0.999933
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16827719 109 - 23771897
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGGUAGCGGUUAAGGCGUAUCGGUUGGGAAUCGGUUCGGUAUCGGGUUGACCGAUAUGGAGCCGU
.((((((....))).)))((.(((((.....))))).))..(((.((((((.......)).)))).)))......((((((.(((((((.....))))))).)))))). ( -43.60)
>DroSec_CAF1 17055 109 - 1
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGGUAGCGGUUAAGGCGUAUCGGUUAGGAAUCGGUUCGGUAUCGGGGUGACCGGUAUGGAGCCGC
.((((((....))).)))((.(((((.....))))).))..(((.((((((.......)).)))).)))......((((((.(((((((.....))))))).)))))). ( -42.80)
>DroSim_CAF1 18479 109 - 1
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGUUAGCGGUUAAGGCGUAUCGGUUACGAAUCGGUUCGGUAUCGGGUUGACCGGUAUGGAGCCGC
((((((((.(((.(((..((.(((((.....))))).))..))).))).((.......))...))))))))....((((((.(((((((.....))))))).)))))). ( -42.90)
>DroEre_CAF1 17428 109 - 1
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGGUAGCGGUUAAGGCGUAUCGGUUGGGAAUCGGUUCGGUAUCGGGUUAACCGGUAUGGAACCGC
.((((((....))).)))((((.((..(((.......)))..)))))).((((((....((((((((((((...(((((.....))))).)))))))))))).)))))) ( -43.00)
>DroYak_CAF1 17270 109 - 1
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGGUAGCGGUUAAGGCGUAUCGGUUAGGAAUCGGUACGGUAUCGGGUUAACCGGUAUGGAACCGC
.((((((....))).)))((((.((..(((.......)))..)))))).((((((....(((((((((.....)))))))))(((((((.....)))))))..)))))) ( -44.60)
>consensus
GUGAUUGGAAACAGUUCAGCCCUGUGGCGCACACAGAGCGAAACGGGUAGCGGUUAAGGCGUAUCGGUUAGGAAUCGGUUCGGUAUCGGGUUGACCGGUAUGGAGCCGC
.((((((....))).)))((((.((..(((.......)))..)))))).((((((....((((((((((((...(((((.....))))).)))))))))))).)))))) (-41.86 = -41.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:18 2006