Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,826,264 – 16,826,368 |
Length | 104 |
Max. P | 0.992708 |
Location | 16,826,264 – 16,826,368 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.09 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -25.30 |
Energy contribution | -25.36 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.78 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16826264 104 + 23771897 UGGCACUUCUGUGACCACUGCCAGAUGUUAGUGCCGGUAAAGUAUUUGCCAUAGAAUAU-----UUCUGUAUAUCCACGAAAAAGCAUUUGUAAAAAGUGGAUGUGCGG .((((((((((.(.......)))))....))))))(((((.....))))).........-----..((((((((((((......((....)).....)))))))))))) ( -32.70) >DroSim_CAF1 16764 109 + 1 UGGCACUUCUGUGACCACUGCCAGAUUUUAGUGCCGGUAAAGUAUUCGACAUAGAAUAUGUUAUAUCUGUAUAUCCACGACAAAGCAUUUGUAAAAAGUGGAAGUGCGG .((((((((((.(.......)))))....)))))).((((.((((((......)))))).))))..((((((.(((((.((((.....)))).....))))).)))))) ( -32.30) >DroEre_CAF1 15588 103 + 1 UGGCACUUCUGUGACCAGUGCCAGAUGCUAGUGCCGGUAAAUAGUUCGCCAUGGAAUAU--AGUAUCUGUAUCUCCACGCAAAAUCA----CGAAAAGUGGAGGUGUGG .((((((.........))))))((((((((...(((((.........)))..))....)--))))))).(((((((((.........----......)))))))))... ( -32.06) >DroYak_CAF1 15489 93 + 1 UGGCACUUCUGUGACCACUGCCAGAUGCUUGUGCCGGUAAGUAG--------------U--AGUAUCUGUAUCUCCACGCAAAAGCAUUUGUGAAAUGUGGAGGUGCGG ((((((....))).)))((((((((((((..(((......))).--------------.--)))))))).(((((((((.....((....))....))))))))))))) ( -32.70) >consensus UGGCACUUCUGUGACCACUGCCAGAUGCUAGUGCCGGUAAAGAAUUCGCCAUAGAAUAU__AGUAUCUGUAUAUCCACGAAAAAGCAUUUGUAAAAAGUGGAGGUGCGG .((((((((((.(.......)))))....))))))...............................((((((((((((...................)))))))))))) (-25.30 = -25.36 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:17 2006