| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,819,619 – 16,819,719 |
| Length | 100 |
| Max. P | 0.886145 |
| Location | 16,819,619 – 16,819,719 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -21.02 |
| Consensus MFE | -13.65 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16819619 100 + 23771897 AUGCUGG-CUGUAUGCGUGUGUGUGUGUGCAUGGCCGUAAAGGCUGACUGACUGAUAAAAAAGGAAACAAAAAAAUAACAAGAA-AAUAAAAUAUACACAUA ((((...-......))))((((((((((....((((.....)))).................(....)................-......)))))))))). ( -20.60) >DroSec_CAF1 8774 101 + 1 AUGCUGG-CUGUAUGCGUGUGUGUGUGUGCAUGGCCGUAAAGGCUGACUGACUGAUAAAAAAGGAAACAAAAAAAUAACAAGAAAAAUAAUAUAUACACAUA ......(-(.....))((((((((((((....((((.....)))).................(....).....................)))))))))))). ( -22.60) >DroSim_CAF1 9017 101 + 1 AUGCUGG-CUGUAUGCGUGUGUGUGUGUGCAUGGCCGUAAAGGCUGACUGACUGAUAAAAAAGGAAACAAAAAAAUAACAAGAAAAAUAAAAUACACACAUA ((((...-......))))((((((((((....((((.....)))).................(....).......................)))))))))). ( -22.50) >DroEre_CAF1 8716 93 + 1 AUGCUGG-CUGUAUGCGAGUGUGUGUGUGCAUGGCCGUAAAGGCUGA----CUGAUAAAAAAGGAAACAAA-AAAUAACAAGAAAAAUAAAACACACAC--- ..(((.(-(.....)).)))((((((((....((((.....))))..----...........(....)...-...................))))))))--- ( -24.30) >DroYak_CAF1 8839 94 + 1 AUGCUGC-CUGUAUGCGUGCGUGUGUGUGCAUGGCCGUAAAGGCUGA----CUGAUAAAAAAGGAAACAAAAAAAUAACAAGAAAAAUAAAACAUACAC--- ..(((((-......))).))((((((((....((((.....))))..----...........(....).......................))))))))--- ( -20.50) >DroAna_CAF1 8366 77 + 1 AUGUUGGCCUGCAUGCGUGUGUGUGUGAGUGUGGUCAUAAAGGCUGACUGAUAAAAAAAAAAGGAAAA--UAAAAUAA-----------------A------ ..((..((((((((((....))))))..(((....)))..))))..))....................--........-----------------.------ ( -15.60) >consensus AUGCUGG_CUGUAUGCGUGUGUGUGUGUGCAUGGCCGUAAAGGCUGACUGACUGAUAAAAAAGGAAACAAAAAAAUAACAAGAAAAAUAAAAUAUACAC___ ((((......))))......((((((((....((((.....)))).................(....).......................))))))))... (-13.65 = -14.23 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:15 2006