Locus 6303

Sequence ID	3L_DroMel_CAF1
Location	16,798,280 – 16,798,389
Length	109
Max. P	0.956526

overview

Window 2

Location	16,798,280 – 16,798,389
Length	109
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	87.93
Mean single sequence MFE	-27.95
Consensus MFE	-20.31
Energy contribution	-21.25
Covariance contribution	0.94
Combinations/Pair	1.10
Mean z-score	-3.12
Structure conservation index	0.73
SVM decision value	1.47
SVM RNA-class probability	0.956526
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16798280 109 + 23771897
CUAUAACAAUAACUAAUUGCACUCAAACUGGUCGAAUUCUCUGAUCAGUUGAAAAGUUACAAUAUCCACUGGCUUAGUAACAAGUCAGUAUGCAGAUUGGUG-----ACAAAGU
...........((((((((((.((((.(((((((.......)))))))))))...............((((((((......)))))))).)))).)))))).-----....... ( -26.70)
>DroSec_CAF1 46602 107 + 1
CUAUAACAAUAACUAAUUGCACUCAAACUGGUCGAAUU--CUGAUCAGUUGAAAAGUUACAAUAUCCACUGACUUAGUAACAAGUCAGUAUGCAGAUUGGUG-----ACAAAGU
...........((((((((((.((((.(((((((....--.)))))))))))...............((((((((......)))))))).)))).)))))).-----....... ( -27.60)
>DroSim_CAF1 51512 107 + 1
CUAUAACAAUAACUAAUUGCACUCAAACUGGUCGAAUU--CUGAUCGUUUGAAAAGUUACAAUAUCCACUGACUUAGUAACAAGUCAGUAUGCAGAUUGGUG-----ACAAGGU
...........((((((((((.((((((.(((((....--.)))))))))))...............((((((((......)))))))).)))).)))))).-----....... ( -26.70)
>DroEre_CAF1 46873 112 + 1
CUAUAACAAUAACUAAAUGCAUUCAAACUGGUCGAAUG--CUGGUGACUUGAAAAGUUACGAUUAGCACUGACUUAGUAACAAGUCAGUAUGCAGAUUGAGGGCAAAGUUAAGA
.........(((((...(((.(((((.(((.......(--(((((((((.....))))))...))))((((((((......))))))))...))).))))).))).)))))... ( -30.80)
>consensus
CUAUAACAAUAACUAAUUGCACUCAAACUGGUCGAAUU__CUGAUCAGUUGAAAAGUUACAAUAUCCACUGACUUAGUAACAAGUCAGUAUGCAGAUUGGUG_____ACAAAGU
...........((((((((((.((((.(((((((.......)))))))))))...............((((((((......)))))))).)))).))))))............. (-20.31 = -21.25 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:10 2006