| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,797,801 – 16,797,895 |
| Length | 94 |
| Max. P | 0.997713 |
| Location | 16,797,801 – 16,797,895 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 85.20 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -20.70 |
| Energy contribution | -20.94 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.91 |
| SVM RNA-class probability | 0.997713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16797801 94 - 23771897 UCGCCAGCUUGUAGAUUGUAUGCAUAUAUAAAUUGUAAAUAAUUUGCAAGCUUGUUGGGCCUUCUUGUUGCUGCUGCUGCUACUACUGCUGACC ..((.((((((((((((((.((((.........)))).)))))))))))))).))..(((......((.((....)).)).......))).... ( -25.02) >DroSec_CAF1 46159 74 - 1 UCGCCGGCUUGUAGAUUGUAUGCAUA--UAAAUUGUAAAUAAUUUGCAAGCUUGUUGGGCCUUCUUGUUGCU------------------GUCC ..(((((((((((((((((.((((..--.....)))).)))))))))))))).....)))............------------------.... ( -22.80) >DroSim_CAF1 51067 74 - 1 UCGCCAGCUUGUAGAUUGUAUGCAUA--UAAAUUGUAAAUAAUUUGCAAGCUUGCUGGGCCUUCUUGUUGCU------------------GUCC ..((.((((((((((((((.((((..--.....)))).)))))))))))))).)).((((............------------------)))) ( -24.70) >DroEre_CAF1 46410 83 - 1 UCGCCAGCGUGUAGAUUGUAUGCAUA--UAAAUUGUAAAUAAUUUGCAAGCUUGUUGGGCCUUCUUGUUGGUGCUGCU---------GCUGUCC ....((((.((((((((((.((((..--.....)))).))))))))))(((.....(.(((........))).).)))---------))))... ( -23.70) >DroYak_CAF1 46864 83 - 1 UCGCCAGCUUGUAGAUUGUAUGCAUA--UAAAUUGUAAAUAAUUUGCAAGCUUGUUGUGCCUUCUUGUUGGUGCCGCG---------GCUGUCC ..(((((((((((((((((.((((..--.....)))).)))))))))))))).((.(..((........))..).)))---------))..... ( -32.70) >consensus UCGCCAGCUUGUAGAUUGUAUGCAUA__UAAAUUGUAAAUAAUUUGCAAGCUUGUUGGGCCUUCUUGUUGCUGC_GC__________GCUGUCC ..(((((((((((((((((.((((.........)))).)))))))))))))).....))).................................. (-20.70 = -20.94 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:07 2006