| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,870,417 – 1,870,507 |
| Length | 90 |
| Max. P | 0.579265 |
| Location | 1,870,417 – 1,870,507 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.66 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -16.69 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1870417 90 - 23771897 --UCGUGGGCCGCUGGUAUGUGUCUCUGUUUCCCUACGUUUUUUAUUAGAUCACGAUUUGGAUGUUAGCAAACAUUCGCGCAUACCAAG--CUG--- --.........((((((((((((...(((((.(..((((((...(((.......)))..))))))..).)))))...))))))))).))--)..--- ( -23.50) >DroPse_CAF1 9762 96 - 1 GUCUGUGCGC-UGAGGUAUGUGUCUCUAUUUUUUGUGCUGUUUUAUUAGAUCACGAUUUUGAUGUUGGCAAACAUUCGCGCAUACCAAAAGCCAACA .....((.((-(..(((((((((.........((((((((......)))..)))))....((((((....)))))).)))))))))...)))))... ( -23.90) >DroEre_CAF1 10198 90 - 1 --UCGUGGGCCUCUGGUAUGUGUCUCUGUGCCUCUACGUUUUUUAUUAGAUCACGAUUUGGAUGUUAGCAAACAUUCGCGCAUACCAAG--CCA--- --.....(((...((((((((((...((((..((((..........)))).))))....(((((((....))))))))))))))))).)--)).--- ( -27.10) >DroYak_CAF1 10488 90 - 1 --UCGUGGGCCUCUGGUAUGUGUCUCUGUUUUUCUACGUUUUUUAUUAGAUCACGAUUUGGAUGUUAGCAAACAUUCGCGCAUACCAAG--CCA--- --.....(((...((((((((((.............(((..((.....))..)))....(((((((....))))))))))))))))).)--)).--- ( -25.30) >DroAna_CAF1 13352 90 - 1 --CUGUGGGCCCGAGCUAUGUGUCUCUGCUUUCCUACGUUUUUUAUUAGAUCACGAUUUGGAUGUUAGGAAACAUUCGCGCAUACCAAA--GCC--- --((.(((((....))(((((((...((.((((((((((((...(((.......)))..))))).)))))))))...)))))))))).)--)..--- ( -19.90) >DroPer_CAF1 9691 96 - 1 GUCUGUGUGC-UGAGGUAUGUGUCUCUAUUUUUUGUGCUGUUUUAUUAGAUCACGAUUUUGAUGUUGGCAAACAUUCGCGCAUACCAAAAGCCAACA .....((.((-(..(((((((((.........((((((((......)))..)))))....((((((....)))))).)))))))))...)))))... ( -23.90) >consensus __CCGUGGGCCUCAGGUAUGUGUCUCUGUUUUUCUACGUUUUUUAUUAGAUCACGAUUUGGAUGUUAGCAAACAUUCGCGCAUACCAAA__CCA___ ..............(((((((((.((((..................)))).........(((((((....))))))))))))))))........... (-16.69 = -16.97 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:11 2006