Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,781,506 – 16,781,598 |
Length | 92 |
Max. P | 0.725750 |
Location | 16,781,506 – 16,781,598 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -19.97 |
Consensus MFE | -14.76 |
Energy contribution | -14.09 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.24 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16781506 92 + 23771897 UUGUUGUUGCGACCAUUCUUUUUUCCUAUUUCAUUUUUUUGGUGGUGCCUGGCACCGGAUCGCAUCUUUUAGCAUAAAUUAU--UUGCGGCUAG .......(((((((................(((......))).(((((...))))))).))))).....((((...((....--))...)))). ( -19.50) >DroPse_CAF1 30798 74 + 1 -UGUUG--GAGAUCGUU-----------------UUUUUCGGUGGUGCCUGGCACCGCAUCGCAUCUUUUAGCAUAAAUUAUACUCUCGACUAG -.((((--(((......-----------------.......(((((((...)))))))...((........))..........))).))))... ( -19.30) >DroSim_CAF1 32778 92 + 1 UUGUUGUUGCGACCAUUCUUUUUUCCUAUUUCAUUUUUUUGGUGGUGCCUGGCACCGGAUCGCAUCUUUUAGCAUAAAUUAU--UUGCGGCUAG .......(((((((................(((......))).(((((...))))))).))))).....((((...((....--))...)))). ( -19.50) >DroEre_CAF1 30597 92 + 1 UUGUUGUUGCGACCAUUCUUUUUUGCCAUUUAAUUUUUUUGGUGGUGCCUGGCACCGGAUCGCAUCUUUUAGCAUAAAUUAU--UUGCGGCUAG .......(((((((..........((((...........))))(((((...))))))).))))).....((((...((....--))...)))). ( -22.70) >DroYak_CAF1 30603 92 + 1 UUGUUGUUGCGACCAUUCUUUUUUCCUAUUUCAUUUUUUUGGUGGUGCCUGGCACCGGAUCGCAUCUUUUAGCAUAAAUUAU--UUGCGGCUAG .......(((((((................(((......))).(((((...))))))).))))).....((((...((....--))...)))). ( -19.50) >DroPer_CAF1 31153 74 + 1 -UGUUG--GAGAUCGUU-----------------UUUUUCGGUGGUGCCUGGCACCGCAUCGCAUCUUUUAGCAUAAAUUAUACUCUCGACUAG -.((((--(((......-----------------.......(((((((...)))))))...((........))..........))).))))... ( -19.30) >consensus UUGUUGUUGCGACCAUUCUUUUUUCCUAUUUCAUUUUUUUGGUGGUGCCUGGCACCGGAUCGCAUCUUUUAGCAUAAAUUAU__UUGCGGCUAG .....((((((((((........................))))(((((...))))).....((........))............))))))... (-14.76 = -14.09 + -0.66)
Location | 16,781,506 – 16,781,598 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -16.80 |
Consensus MFE | -12.66 |
Energy contribution | -12.00 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.75 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16781506 92 - 23771897 CUAGCCGCAA--AUAAUUUAUGCUAAAAGAUGCGAUCCGGUGCCAGGCACCACCAAAAAAAUGAAAUAGGAAAAAAGAAUGGUCGCAACAACAA .((((.....--.........))))...(.(((((((.(((((...))))).((..............))..........))))))).)..... ( -18.18) >DroPse_CAF1 30798 74 - 1 CUAGUCGAGAGUAUAAUUUAUGCUAAAAGAUGCGAUGCGGUGCCAGGCACCACCGAAAAA-----------------AACGAUCUC--CAACA- ......((((((((.((((........))))...))))(((((...))))).........-----------------.....))))--.....- ( -13.80) >DroSim_CAF1 32778 92 - 1 CUAGCCGCAA--AUAAUUUAUGCUAAAAGAUGCGAUCCGGUGCCAGGCACCACCAAAAAAAUGAAAUAGGAAAAAAGAAUGGUCGCAACAACAA .((((.....--.........))))...(.(((((((.(((((...))))).((..............))..........))))))).)..... ( -18.18) >DroEre_CAF1 30597 92 - 1 CUAGCCGCAA--AUAAUUUAUGCUAAAAGAUGCGAUCCGGUGCCAGGCACCACCAAAAAAAUUAAAUGGCAAAAAAGAAUGGUCGCAACAACAA .((((.....--.........))))...(.(((((((.(((((...))))).(((...........)))...........))))))).)..... ( -18.64) >DroYak_CAF1 30603 92 - 1 CUAGCCGCAA--AUAAUUUAUGCUAAAAGAUGCGAUCCGGUGCCAGGCACCACCAAAAAAAUGAAAUAGGAAAAAAGAAUGGUCGCAACAACAA .((((.....--.........))))...(.(((((((.(((((...))))).((..............))..........))))))).)..... ( -18.18) >DroPer_CAF1 31153 74 - 1 CUAGUCGAGAGUAUAAUUUAUGCUAAAAGAUGCGAUGCGGUGCCAGGCACCACCGAAAAA-----------------AACGAUCUC--CAACA- ......((((((((.((((........))))...))))(((((...))))).........-----------------.....))))--.....- ( -13.80) >consensus CUAGCCGCAA__AUAAUUUAUGCUAAAAGAUGCGAUCCGGUGCCAGGCACCACCAAAAAAAUGAAAUAGGAAAAAAGAAUGGUCGCAACAACAA ...((((.............(((........)))....(((((...)))))............................))))........... (-12.66 = -12.00 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:03 2006