| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,757,752 – 16,757,862 |
| Length | 110 |
| Max. P | 0.613761 |
| Location | 16,757,752 – 16,757,862 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.26 |
| Mean single sequence MFE | -37.40 |
| Consensus MFE | -25.19 |
| Energy contribution | -24.12 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16757752 110 - 23771897 --UUUUCUUAUUACAACAGGGCAAAGCCGAGCACAUUGUAAUCUCUGGACAUGAUGGUGGUACCGGUGCUAGCUCCUGGACAGGCAUUAAGAAUGCCGGAUUACCCUGGGAG --..............(((((.....(((.(((.....((((.((((..((.((.(.(((((....))))).))).))..)))).))))....))))))....))))).... ( -33.40) >DroVir_CAF1 6492 104 - 1 -------C-AUUUUUGCAGGGCAAAGCCGAGCAUAUUGUCAUCUCUGGCCAUGAUGGCGGCACCGGCGCCAGCUCCUGGACGGGCAUCAAGAAUGCCGGACUGCCUUGGGAG -------.-....((.(((((((...(((.((((..(((((((.........)))))))((.(((...((((...)))).))))).......)))))))..))))))).)). ( -40.90) >DroPse_CAF1 7263 109 - 1 --CUUUCUUG-UAUUUUAGGGCAAAGCCGAACAUAUUGUAAUCUCUGGCCACGAUGGCGGCACUGGUGCCAGCUCCUGGACGGGCAUUAAGAAUGCAGGCAUGCCCUGGGAA --........-..((((((((((..(((...(((....((((.((((.(((.((..((((((....)))).)))).))).)))).))))...)))..))).)))))))))). ( -36.90) >DroWil_CAF1 42759 110 - 1 --UAUUAUUGUUUUCGUAGGGUAAAGCUGAGCAUAUUGUAAUCUCUGGUCAUGAUGGCGGCACUGGUGCUAGCUCCUGGACUGGCAUCAAGAAUGCCGGUCUACCCUGGGAA --..........(((.(((((((.((((.(((((..(((..((((.......)).))..)))...)))))))))....(((((((((.....)))))))))))))))).))) ( -39.60) >DroMoj_CAF1 6515 111 - 1 AUUAUGAC-UUCUGUACAGGGCAAAGCGGAACAUAUUGUCAUUUCUGGCCAUGAUGGCGGCACCGGUGCCAGCUCCUGGACGGGCAUUAAGAAUGCUGGCCUGCCCUGGGAG ........-.......(((((((....(((.(...............(((.....)))((((....)))).).))).((.(.(((((.....))))).)))))))))).... ( -37.10) >DroAna_CAF1 6962 110 - 1 --UACUCUUUCCAAUCCAGGGCAAAGCCGAACACAUUGUCAUUUCGGGACAUGAUGGCGGCACUGGAGCCAGCUCAUGGACUGGCAUCAAGAACGCCGGAUUACCCUGGGAA --............(((((((.....((.....(((.(((.......))))))..((((....((..((((((.....).)))))..))....))))))....))))))).. ( -36.50) >consensus __UAUUCUUAUUAUUACAGGGCAAAGCCGAACAUAUUGUAAUCUCUGGCCAUGAUGGCGGCACCGGUGCCAGCUCCUGGACGGGCAUCAAGAAUGCCGGACUACCCUGGGAA ................(((((((..((((....((((((...........)))))).)))).((..((((((...)))).))(((((.....)))))))..))))))).... (-25.19 = -24.12 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:55 2006