Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,757,329 – 16,757,428 |
Length | 99 |
Max. P | 0.999703 |
Location | 16,757,329 – 16,757,428 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -29.64 |
Consensus MFE | -25.78 |
Energy contribution | -26.10 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -3.08 |
Structure conservation index | 0.87 |
SVM decision value | 3.92 |
SVM RNA-class probability | 0.999703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16757329 99 + 23771897 UGGAUCAUGUCCAUGGGUUCGCAAUCGAGACAUCUUUCAUUUGUCAGAUUUCAAAGAAUUUGAAAUUCUCAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((...((..((((((((.........)))).((((((((.....))))))))....))))..))...)))).)))))).))))) ( -30.00) >DroSec_CAF1 6532 99 + 1 UGGAUCAUGUCCAUGGGUUCGCAAUCGAGACAUCUUUCAUUUGUCAGAUUUCAAAGAAUUUAAAAUUCUCAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((..(((((((..((((.........)))).))))(((((((((.....)))))..)))))))....)))).)))))).))))) ( -29.20) >DroSim_CAF1 6822 99 + 1 UGGAUCAUGUCCAUGGGUUCGCAAUUGAGACAUCUUUCAUUUGUCAGAUUUCAAAGAAUUUAAAAUUCUCAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((..(((......((((.........)))).....(((((((((.....)))))..)))))))....)))).)))))).))))) ( -27.80) >DroEre_CAF1 6796 98 + 1 UGGAUCAUGUCCAUGGGUUCGCAAUCGAGACAUCUAUCAUUUGUCAGAUUUCAAACAAU-UGAAGCUCUUAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((...((.(((..((((.........)))).)))(((((....)-))))((((.....))))))...)))).)))))).))))) ( -31.00) >DroYak_CAF1 6528 98 + 1 UGGAUCAUGUCCAUGGGUUCGCAAUCGAGACAUCUUUCAAUUGUCAGAUUUCAAGCAAU-GGAAACUCUUAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((..(((((((..((((.........)))).))))((((.....-(....).....)))))))....)))).)))))).))))) ( -30.20) >consensus UGGAUCAUGUCCAUGGGUUCGCAAUCGAGACAUCUUUCAUUUGUCAGAUUUCAAAGAAUUUGAAAUUCUCAUUGAGCGCUCUUCCGCUGGACAAGAUUC .(((((.((((((((((..(((((((..((((.........)))).))))(((((((((.....)))))..)))))))....)))).)))))).))))) (-25.78 = -26.10 + 0.32)
Location | 16,757,329 – 16,757,428 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.54 |
Mean single sequence MFE | -25.64 |
Consensus MFE | -20.92 |
Energy contribution | -21.52 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.82 |
Structure conservation index | 0.82 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16757329 99 - 23771897 GAAUCUUGUCCAGCGGAAGAGCGCUCAAUGAGAAUUUCAAAUUCUUUGAAAUCUGACAAAUGAAAGAUGUCUCGAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((....(((.((....(((.((((((.....)))))))))((((.........))))..)).)))....)).)))))).))).). ( -24.80) >DroSec_CAF1 6532 99 - 1 GAAUCUUGUCCAGCGGAAGAGCGCUCAAUGAGAAUUUUAAAUUCUUUGAAAUCUGACAAAUGAAAGAUGUCUCGAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((.....((((((..((((((.....)))))))))((((.((((.........))))..)))))))...)).)))))).))).). ( -24.60) >DroSim_CAF1 6822 99 - 1 GAAUCUUGUCCAGCGGAAGAGCGCUCAAUGAGAAUUUUAAAUUCUUUGAAAUCUGACAAAUGAAAGAUGUCUCAAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((.....(((....((((((((((....((((((........)))).))))))).)))))...)))...)).)))))).))).). ( -23.40) >DroEre_CAF1 6796 98 - 1 GAAUCUUGUCCAGCGGAAGAGCGCUCAAUAAGAGCUUCA-AUUGUUUGAAAUCUGACAAAUGAUAGAUGUCUCGAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((..(((.((((.....))))))).-...(((((.((((.((((.........))))..)))).))))))).)))))).))).). ( -29.60) >DroYak_CAF1 6528 98 - 1 GAAUCUUGUCCAGCGGAAGAGCGCUCAAUAAGAGUUUCC-AUUGCUUGAAAUCUGACAAUUGAAAGAUGUCUCGAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((((....((((.....))))))))-.((((....((((.((((.((....))))))..)))))))).....)))))).))).). ( -25.80) >consensus GAAUCUUGUCCAGCGGAAGAGCGCUCAAUGAGAAUUUCAAAUUCUUUGAAAUCUGACAAAUGAAAGAUGUCUCGAUUGCGAACCCAUGGACAUGAUCCA (.(((.((((((..((.....(((....(((((..(((((.....)))))((((..(....)..)))).)))))...)))...)).)))))).))).). (-20.92 = -21.52 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:54 2006