Locus 6291

Sequence ID 3L_DroMel_CAF1
Location 16,753,753 – 16,753,856
Length 103
Max. P 0.691637
window10091

overview

Window 1

Location 16,753,753 – 16,753,856
Length 103
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.58
Mean single sequence MFE -28.77
Consensus MFE -22.33
Energy contribution -21.88
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -0.76
Structure conservation index 0.78
SVM decision value 0.33
SVM RNA-class probability 0.691637
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16753753 103 - 23771897
GAUUUCUGUAUCUUUGCAUAACAAA-AAUGUUAA-------UUUA-UCUUCUGU-CCUUUG-CAGAUUGCCGGCGUGGCCAGUCGCUGGUCGUCUGGGCCAUUACCGAGGGUCG
......((((....))))(((((..-..))))).-------....-......(.-(((((.-(((((.(((((((........))))))).)))))((......))))))).). ( -28.20)
>DroPse_CAF1 3290 102 - 1
-------GGGACUCUCAAUG--AAG-GAUGUUCUUUGAUUUUCUA-CCUUUUUUUGUUUUA-UAGACUGCCGGCGUGGACAGUCGCUGGUCGUCUGGGCCAUCACCGAGGGUCG
-------..((((((((((.--(((-(.....)))).))).....-...............-(((((.(((((((........))))))).)))))((......))))))))). ( -32.70)
>DroSec_CAF1 2948 107 - 1
GAUUUCUGUAUCUUUUCAUGACAAAAAAUGUUAA---A---UUUACCCUUCUGU-UCUUUGCCAGAUUGCCGACGUGGUCAGUCGCUGGUCGUCUGGGCCAUUACCGAGGGUCG
(((......)))......(((((.....))))).---.---...((((((..((-......((((((.((((.((........)).)))).))))))......)).)))))).. ( -24.50)
>DroEre_CAF1 3023 102 - 1
UAUUUUCGUAGUUAUUUA-AACAAG-AAUGAUAA-------UUUA-CCUUCUUU-CUUUUG-UAGAUUGCCGGCGAGGCCAGUCGCUGGUCGUCUGGGCCAUUACCGAGGGUCG
..........(((((((.-.....)-))))))..-------...(-(((((...-......-(((((.((((((((......)))))))).)))))((......)))))))).. ( -28.60)
>DroYak_CAF1 2917 102 - 1
GAUUUUUAUAUUUAUUUA-AACAAA-GACGUUAA-------UUUA-CCUUAAUU-CUUUUG-CAGAUUGCCGGCGUGGCCAGUCGCUGGUCGUCUGGGCCAUUACCGAGGGUCG
(((((((...........-...(((-((.(((((-------....-..))))))-))))..-(((((.(((((((........))))))).)))))((......))))))))). ( -25.80)
>DroPer_CAF1 3287 102 - 1
-------GGGACUCUCAAUG--AGG-GAUGUUCUUUGAUUUUCUA-CCUUUUUUUGUUUUA-UAGACUGCCGGCGUGGACAGUCGCUGGUCGUCUGGGCCAUCACCGAGGGUCG
-------..(((((((....--.((-((((..(...(.....)..-...............-(((((.(((((((........))))))).))))))..)))).))))))))). ( -32.80)
>consensus
GAUUU_UGUAUCUAUUAAUAACAAA_AAUGUUAA_______UUUA_CCUUCUUU_CUUUUG_CAGAUUGCCGGCGUGGCCAGUCGCUGGUCGUCUGGGCCAUUACCGAGGGUCG
..............................................(((((...........(((((.(((((((........))))))).)))))((......)))))))... (-22.33 = -21.88 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:51 2006