Locus 6290

Sequence ID 3L_DroMel_CAF1
Location 16,753,005 – 16,753,095
Length 90
Max. P 0.730195
window10090

overview

Window 0

Location 16,753,005 – 16,753,095
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 95.01
Mean single sequence MFE -18.67
Consensus MFE -17.74
Energy contribution -17.88
Covariance contribution 0.14
Combinations/Pair 1.10
Mean z-score -0.94
Structure conservation index 0.95
SVM decision value 0.42
SVM RNA-class probability 0.730195
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16753005 90 + 23771897
AGCCACUUAGGUACAUUUGCGGUCAACGGUCGAAUGCAGUUCAAAACACAAAAACAACAUCUA-AAAAAUGCGUUUCGAUAUUGGCCGAGU
.(((.....))).......(((((((..((((((((((.........................-.....)))).)))))).)))))))... ( -20.51)
>DroSec_CAF1 2198 91 + 1
AGCCACUUAGGUACAUUUGCGGUCAACGGUCGAAUGCAGUUCAAAACACACAAACAACAUCUAAAAAAAUGCGUUUCGAUAUUGGCCGAGU
.(((.....))).......(((((((..((((((((((...............................)))).)))))).)))))))... ( -20.48)
>DroSim_CAF1 2214 91 + 1
AGCCACUUAGGUACAUUUGCGGUCAACGGUCGAAUGCAGUUCAAAACACACAAACAACAUCUAUAAAAAUGCGUUUCGAUAUUGGCCGAGU
.(((.....))).......(((((((..((((((((((...............................)))).)))))).)))))))... ( -20.48)
>DroEre_CAF1 2263 91 + 1
AGCCACUUAGGUACUUUUGCGGUCAACGAUCGAAUGCAGUUCAAAACACACAAACAACAUCUAAAAAAAUGCGUCUGGAUAUUGGCCGAGU
.(((.....))).......(((((((..(((.((((((...............................))))).).))).)))))))... ( -16.38)
>DroYak_CAF1 2173 91 + 1
AGCCACUUAGGUACUUUUGCGGUCAACGAUCGAAUGCAGUUCAAAACACACAAACAACAUCUAAAAAAAUGCGUUUCGAUAUUGGCCGAGU
.(((.....))).......(((((((..((((((((((...............................)))).)))))).)))))))... ( -20.18)
>DroAna_CAF1 2260 90 + 1
AGCCACUUAGGUACUUCUGCGAUUAACGGUCGAAUGCAGUUAAAAACACACAAACAACAUCUA-AAAAAUGCGGUUCGAUAUUGGCCGAGU
.(((((.((((....)))).).......((((((((((.........................-.....))).)))))))..))))..... ( -14.01)
>consensus
AGCCACUUAGGUACAUUUGCGGUCAACGGUCGAAUGCAGUUCAAAACACACAAACAACAUCUAAAAAAAUGCGUUUCGAUAUUGGCCGAGU
.(((.....))).......(((((((..((((((((((...............................)))).)))))).)))))))... (-17.74 = -17.88 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:49 2006