Locus 629

Sequence ID 3L_DroMel_CAF1
Location 1,866,537 – 1,866,630
Length 93
Max. P 0.859525
window967

overview

Window 7

Location 1,866,537 – 1,866,630
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 87.54
Mean single sequence MFE -32.08
Consensus MFE -28.40
Energy contribution -28.57
Covariance contribution 0.17
Combinations/Pair 1.15
Mean z-score -1.81
Structure conservation index 0.89
SVM decision value 0.82
SVM RNA-class probability 0.859525
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1866537 93 - 23771897
CACUGCGCUGCCGACGUCGCUGCUUUCAGCCUGU--GCUCAUUUCGCAUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
((((((((.((..(((..((((....)))).)))--((.((((((((...(((........)))...)))))))).)))).))))))))...... ( -32.10)
>DroSec_CAF1 6395 93 - 1
CACUGCGCUGCCGACGUCGCUGCCUUCAGCCUGU--GCUCAUUUCGCAUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
((((((((.((..(((..((((....)))).)))--((.((((((((...(((........)))...)))))))).)))).))))))))...... ( -32.10)
>DroSim_CAF1 6651 93 - 1
CACUGCGCUGCCGACGUCGCUGCCGUCAGCCUGU--GCUCAUUUCGCAUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
((((((((.((.((((.......)))).))....--((.((((((((...(((........)))...)))))))).))...))))))))...... ( -32.70)
>DroEre_CAF1 6343 93 - 1
GGCCGCGCUGCCGACGCCGCUGCUUUCAGCCUGU--GCUCAUUUCGCAUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
(....((((((((((...((((....))))....--((.((((((((...(((........)))...)))))))).)))))).))))))....). ( -31.80)
>DroYak_CAF1 6576 93 - 1
GGCUGCGCUGCCGACGUCGCUGCUUUCAGCCUGU--GCUCAUUUCGCCUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
(((......)))..(((((((((...((((....--((.((((((((...(((........)))...)))))))).)))))).)))))))))... ( -35.20)
>DroAna_CAF1 10046 84 - 1
CUC-----GGCCAGCAGCUCGGCCCACUGGCUGUGCGCUCAUUUCGCAUUUG------AUUUCAUUCGUGAAACGUGCGUUGUGCGGUGAUGACG
(.(-----.((((((.((.(((((....))))).))((.(.((((((...((------....))...)))))).).)))))).)).).)...... ( -28.60)
>consensus
CACUGCGCUGCCGACGUCGCUGCCUUCAGCCUGU__GCUCAUUUCGCAUUUGAUUUUGAUUUCACUCGUGAAAUGUGCGUUGUGCGGUGAUGACG
.....((((((((((...((((....))))......((.((((((((...(((........)))...)))))))).)))))).))))))...... (-28.40 = -28.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:10 2006