Locus 6289

Sequence ID 3L_DroMel_CAF1
Location 16,749,242 – 16,749,362
Length 120
Max. P 0.868257
window10089

overview

Window 9

Location 16,749,242 – 16,749,362
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.61
Mean single sequence MFE -43.33
Consensus MFE -31.04
Energy contribution -31.77
Covariance contribution 0.73
Combinations/Pair 1.38
Mean z-score -2.30
Structure conservation index 0.72
SVM decision value 0.86
SVM RNA-class probability 0.868257
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16749242 120 + 23771897
CGUUUCCUUUGGUUCUGGGGCAUUACAUUUGUGGUAGCCACUACUUUGGUGGCAAUUUUCAAGAAGGAGAACGACAUCGAAGACGCGCAUAUGGACGCUCGCUACACGGAGGAGCACGAG
(((((((((((((...(((((....(((.((((((.((((((.....))))))..(((((......)))))((....))...)).)))).)))...)))).).)).)))))))).))).. ( -36.30)
>DroVir_CAF1 667 120 + 1
CGCUUCCUCUGGUUCUGGGGCGUCACAUUCAUUGUGGCCACCACGCUGGUCGCCCUCUUCAAGCGCGAGAACGACAUUGAGGAUGCCCACACUGAAGCGCGCUACAAGGAGGAGCACGAA
.(((.(((((.....(((.((((....((((.(((((.((((.((...((((..(((.........)))..))))..)).)).)).))))).)))))))).)))...))))))))..... ( -42.40)
>DroPse_CAF1 1906 120 + 1
CGCUUCCUCUGGUUCUGGGGUAUUGUCUUUGUGGUGGCCACCACUCUGGUGGCAAUCUUCAAGAAGGAGAAUGACAUUGAAGAUGCCCAUACGGAAUCUCGCUACACGGAGGAGCAUGAG
.(((.((((.((((((((((((((.((..(((.((.((((((.....))))))..(((((.....))))))).)))..)).)))))))...))))))).((.....)))))))))..... ( -48.60)
>DroWil_CAF1 2257 120 + 1
AGAUUCCUAUGGUUCUGGGGCAUCACAUUUAUGGUAGCCACCACAUUGGUGGCCAUCUUUAAGAAGGAGAAUGAUAUCGAAGAUGCCCAUAUGGAAUCACGUUACAAUGAGGAACACGAA
...(((((.(((((((.(((((((.....(((.((.((((((.....))))))..(((((.....))))))).))).....)))))))....)))))))(((....))))))))...... ( -38.40)
>DroAna_CAF1 4112 120 + 1
CGCUUCCUGUGGUUCUGGGGCAUCACAUUCAUCGUGGCCACCACAUUGGUUGCCAUUUUCAAAAAAGAAAAUGACAUCGAGGAUGCCCACAUGGAUGCCCGCUACACAGAGGAGCACGAG
.((((((((((.....((((((((.(((.(((((..((((......))))..)(((((((......)))))))........)))).....)))))))))).)..))))).)))))..... ( -45.70)
>DroPer_CAF1 2936 120 + 1
CGCUUCCUCUGGUUCUGGGGUAUUGUCUUUGUGGUGGCCACCACUCUGGUGGCAAUCUUCAAGAAGGAGAAUGACAUUGAAGAUGCCCAUACGGAAUCUCGCUACACGGAGGAGCAUGAG
.(((.((((.((((((((((((((.((..(((.((.((((((.....))))))..(((((.....))))))).)))..)).)))))))...))))))).((.....)))))))))..... ( -48.60)
>consensus
CGCUUCCUCUGGUUCUGGGGCAUCACAUUUAUGGUGGCCACCACUCUGGUGGCAAUCUUCAAGAAGGAGAAUGACAUCGAAGAUGCCCAUACGGAAGCUCGCUACACGGAGGAGCACGAG
.(((.((((((......(((((((.....(((.((.((((((.....))))))..(((((.....))))))).))).....)))))))...((......)).....)))))))))..... (-31.04 = -31.77 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:49 2006