| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,744,621 – 16,744,717 |
| Length | 96 |
| Max. P | 0.950711 |
| Location | 16,744,621 – 16,744,717 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -9.29 |
| Energy contribution | -9.89 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.34 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16744621 96 + 23771897 ACCGCCGGCUGCAGACCUUCAACUGGAUUGAGGAUUACCUCAUCAUCACCAGAGCUAUCAUCUGUAGAGGUCUCAUCGGCAUAAACUUCCGGAUCA ...(((((.((.(((((((...((((..(((((....)))))......)))).((........)).))))))))))))))................ ( -29.20) >DroSec_CAF1 9366 94 + 1 ACCGCCGGCUGAUGACCUUCAACUGGAUUGAGGAUUGCCUCAUCAUCUGUAGAGCUAUCAUUUGUAGAGGUCUCAUCGUCAUAAGCUUCCGGAU-- .(((..((((.(((((((((((.....))))))...(((((..((..((((....)).))..))..)))))......))))).))))..)))..-- ( -26.30) >DroSim_CAF1 5610 94 + 1 ACCGCCGGCUGAUGACCUUCAACUGGAUUGACGAUUGCCUCAUCAUCUGUAAAGCUAUCAUUUGUAGAGGUCUCAUCGUCAUAAGCUUCCGGAU-- .(((((((.(((......))).))))..(((((((.(((((..((..((.........))..))..)))))...)))))))........)))..-- ( -26.10) >DroEre_CAF1 10917 81 + 1 GGCGCCGGCUGCUGAGCUUCAACUGGAUUGAGGCUCGCCUCUUCUUCUGUAGAGCUAUCAU---------------CUUCAUUGGCUUCCGGCUCG .(.(((((..((((((((((((.....)))))))))((.(((.(....).)))))......---------------.......)))..))))).). ( -30.30) >DroYak_CAF1 10917 81 + 1 AGAGCUGGCUGCUGAUCUUCAAUUGGAUUAGGGAUUGCCUCUUCUUCUGUAGAACUAUCAU---------------CUUCAUUAGCUCCCGGCUCA .(((((((..((((((((.((...(((..(((.....)))..)))..)).)))........---------------.....)))))..))))))). ( -24.71) >consensus ACCGCCGGCUGCUGACCUUCAACUGGAUUGAGGAUUGCCUCAUCAUCUGUAGAGCUAUCAU_UGUAGAGGUCUCAUCGUCAUAAGCUUCCGGAUC_ ....((((................(((.(((((....)))))...)))...(((((...........................))))))))).... ( -9.29 = -9.89 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:42 2006