Locus 6284

Sequence ID 3L_DroMel_CAF1
Location 16,736,519 – 16,736,626
Length 107
Max. P 0.988650
window10078

overview

Window 8

Location 16,736,519 – 16,736,626
Length 107
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 80.18
Mean single sequence MFE -28.13
Consensus MFE -18.63
Energy contribution -18.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.81
Structure conservation index 0.66
SVM decision value 2.13
SVM RNA-class probability 0.988650
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16736519 107 + 23771897
AAAA-----GGAAACAGAGGGAGGAGGGAGGGU----GUUGGCUAUGAGAAGGAAGUCGAAUGGCAUGUCAAACGCAAGUUUCGAAUUUGAUUUAAUUUACGAGCCAAGACCAAUU
....-----(....)...............(((----.((((((.((.(((..(((((((((......((((((....)))).)))))))))))..))).)))))))).))).... ( -29.50)
>DroSim_CAF1 48181 100 + 1
-AAA-----GGAAACGG------GUGGGGGUGU----GUUGGCUAUGAGAAGGAAGUCGAAUGGCAUGUCAAACGCAAGUUUCGAAUUUGAUUUAAUUUACGAGCCAAGACCAAUU
-...-----(....)..------......(.((----.((((((.((.(((..(((((((((......((((((....)))).)))))))))))..))).)))))))).))).... ( -25.70)
>DroAna_CAF1 38330 103 + 1
UAAAUGGCUGGAAA-------------GGGAGUGCAGAUUGGCUGUGAGAAGUAAGCCGAAUUGCAUGUCAAACGCAAGUUUCGAAUUUGAUUUAAUUUACGAGCCAAGACAAAUU
....(((((.((((-------------..((((((((.((((((..........)))))).)))))).((((((....)))).)).......))..))).).)))))......... ( -29.20)
>consensus
_AAA_____GGAAAC_G______G_GGGGGAGU____GUUGGCUAUGAGAAGGAAGUCGAAUGGCAUGUCAAACGCAAGUUUCGAAUUUGAUUUAAUUUACGAGCCAAGACCAAUU
......................................((((((.((.(((..(((((((((......((((((....)))).)))))))))))..))).))))))))........ (-18.63 = -18.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:38 2006