Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,734,694 – 16,734,799 |
Length | 105 |
Max. P | 0.940644 |
Location | 16,734,694 – 16,734,799 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -33.35 |
Consensus MFE | -27.38 |
Energy contribution | -28.62 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 0.82 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16734694 105 - 23771897 GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCAGACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU ..(((((...(((((.....))))).))))).((((.(((......)))...-(((((....))))).....))))..(((((.(((((....)))).).))))). ( -34.50) >DroSec_CAF1 41856 105 - 1 GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCAGACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU ..(((((...(((((.....))))).))))).((((.(((......)))...-(((((....))))).....))))..(((((.(((((....)))).).))))). ( -34.50) >DroSim_CAF1 46334 105 - 1 GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCACACAUCGAGGGAAAUCGCAA-ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU (((((((...(((((.....))))).))))).......((......))))..-(((((....)))))...........(((((.(((((....)))).).))))). ( -31.80) >DroAna_CAF1 36949 96 - 1 GCGCCUCCAAUUUCCAGGU-------GAGGCUCCA---AAGCGAAAUCGCAAGACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU ..((((((.........).-------)))))..((---(((((....)))..((((((....))))))..))))....(((((.(((((....)))).).))))). ( -32.60) >consensus GCGCCUCCAAUUUCCACGUCGGAAAAGAGGCACACAUCGAGGGAAAUCGCAA_ACUUCUAACGAAGUCAAUUUGUCAUCCGGACGCCAUGCUAAUGGACUUCUGGU ..(((((...(((((.....))))).))))).................((((.(((((....)))))....))))...(((((.(((((....)))).).))))). (-27.38 = -28.62 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:37 2006