Locus 6282

Sequence ID 3L_DroMel_CAF1
Location 16,731,133 – 16,731,263
Length 130
Max. P 0.631768
window10075 window10076

overview

Window 5

Location 16,731,133 – 16,731,231
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -22.67
Consensus MFE -13.53
Energy contribution -16.33
Covariance contribution 2.80
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.60
SVM decision value 0.20
SVM RNA-class probability 0.631768
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16731133 98 - 23771897
-GGGAACUGGAAGUGGAACGUGUUUUCGGCGAGAACAUGUUUCUCUCUUGAAAAAAAGAAAAAACAUAAUUUAAGAUAUAACUU-GUAAGUUUAUAAUAG
-..((((((.(((((((((((((((((...)))))))))))))..(((((((.................)))))))....))))-.).)))))....... ( -21.53)
>DroSec_CAF1 38238 92 - 1
-GAGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUGCCUCUUGAAAU------GAAACAUAAUUUAAGAUGUAACUU-GUAAGUUUCUAAUUG
-((((..((.((((.((((((((((((...))))))))))))((.(((((((..------.........))))))).)).))))-.))..))))...... ( -22.30)
>DroSim_CAF1 42702 92 - 1
-GGGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUGCCUCUUGAAAU------GAAACAUAAUUUAAGAUGUAACUU-GUAAGUUUCUAAUUG
-((((((((.((((.((((((((((((...))))))))))))((.(((((((..------.........))))))).)).))))-.).)))))))..... ( -24.70)
>DroEre_CAF1 38787 94 - 1
UGGGAACUGGAAGUGGAUCGUGUUUUCAGAGAGAACUUGUUUCUCUCUGGAAUA-----GAAAACAUAAUUUAAGCAAUAACUU-GUAAGCUUCUAAUUG
.......(((((((((((..(((((((((((((((.....)))))))))))...-----...))))..))))..((((....))-))..))))))).... ( -25.10)
>DroYak_CAF1 41876 94 - 1
-GGGAACUGGAAGUGGAACGUGUUUUCUGAGAGAACUUGUUUCUCUCUUAAAUG-----GAAAACACAAUUAAAGCAAUAACUAAGUAAGUAUCUAAUUG
-.((((((.....(((...((((((((((((((((.....)))))))......)-----))))))))......(....)..)))....))).)))..... ( -19.70)
>consensus
_GGGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUCUCUCUUGAAAA______AAAACAUAAUUUAAGAUAUAACUU_GUAAGUUUCUAAUUG
.(((((((..(((((((((((((((((...)))))))))))))..(((((((.................)))))))....))))....)))))))..... (-13.53 = -16.33 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 16,731,172 – 16,731,263
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -21.07
Consensus MFE -18.57
Energy contribution -18.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.88
SVM decision value -0.05
SVM RNA-class probability 0.508391
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16731172 91 - 23771897
AAUGUUAAUUUUCUUGGAUUUGUUUUUAUUCGGGGAACUGGAAGUGGAACGUGUUUUCGGCGAGAACAUGUUUCUCUCUUGAAAAAAAGAA
........(((((..(((..........(((((....))))).(.(((((((((((((...))))))))))))).)))).)))))...... ( -23.20)
>DroSec_CAF1 38277 85 - 1
AAUGUUAAUUUUCUUGGAUUUGCUUUUAUUCGGAGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUGCCUCUUGAAAU------
..........(((((.((...........)).)))))(.(((.(..((.(((((((((...)))))))))))..).))).)....------ ( -18.90)
>DroSim_CAF1 42741 85 - 1
AAUGUUAAUUUUCUUGGAUUUGCUUUUAUUCGGGGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUGCCUCUUGAAAU------
.........((((((((((........))))))))))(.(((.(..((.(((((((((...)))))))))))..).))).)....------ ( -21.10)
>consensus
AAUGUUAAUUUUCUUGGAUUUGCUUUUAUUCGGGGAACUGGAAGUGGAACGUGUUUUCGGAGAGAACAUGUUUGCCUCUUGAAAU______
.........((((((((((........))))))))))(.(((.(..((((((((((((...))))))))))))..)))).).......... (-18.57 = -18.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:36 2006