Locus 6281

Sequence ID 3L_DroMel_CAF1
Location 16,730,451 – 16,730,542
Length 91
Max. P 0.904852
window10074

overview

Window 4

Location 16,730,451 – 16,730,542
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 79.45
Mean single sequence MFE -13.45
Consensus MFE -3.22
Energy contribution -3.22
Covariance contribution -0.00
Combinations/Pair 1.20
Mean z-score -2.42
Structure conservation index 0.24
SVM decision value 1.04
SVM RNA-class probability 0.904852
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16730451 91 + 23771897
AACACUUGCCGCCAGU------UGAUAAGCAUUUGAAAACGAGUUUCAAAAACCGAAAUCAAAACCUUUACUCAAACAAAAGUGCCAUAUCAACAAA
..............((------(((((.((((((......((((.........................))))......))))))..)))))))... ( -15.11)
>DroSec_CAF1 37620 88 + 1
AACACUUG---CCAGU------UGAUGAGCAUUUGAAAACGAGUUUCAAAAACCGAAAUCAAAACCUUUACUCAAACAAAAGUGCCAUAUCAGCAAA
........---...((------(((((.((((((......((((.........................))))......))))))..)))))))... ( -14.81)
>DroSim_CAF1 42031 88 + 1
AACACUUG---CCAGU------UGAUGAGCAUUUGAAAACGAGUUUCAAAAACCGAAAUCAAAACCUUUACUCAAACAAAAGUGCCAUAUCAACAAA
........---...((------(((((.((((((......((((.........................))))......))))))..)))))))... ( -14.81)
>DroEre_CAF1 38059 93 + 1
AACACUUG---CCAGUUGAGGUUGAUGUUCAUUCGAAAACGAGUUCC-AAAACCGAAUUCGAAACCUUCACUCAAACUUAAAUCCCCGUUCAACAAA
.....(((---..(((.((((((....(((....)))..(((((((.-......))))))).)))))).))))))...................... ( -14.80)
>DroYak_CAF1 41208 71 + 1
AACACUUG---CCAGU----------------UCGAAAACGAGUUCU-AAAACCGAAAUCAGAA------CUCAAACCAAAAUCCCUUAUCAACAAA
........---.....----------------........(((((((-............))))------)))........................ (  -7.70)
>consensus
AACACUUG___CCAGU______UGAUGAGCAUUUGAAAACGAGUUUCAAAAACCGAAAUCAAAACCUUUACUCAAACAAAAGUGCCAUAUCAACAAA
...............................(((((...((.(((.....)))))...))))).................................. ( -3.22 =  -3.22 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:35 2006