Locus 6276

Sequence ID 3L_DroMel_CAF1
Location 16,723,488 – 16,723,579
Length 91
Max. P 0.987871
window10067 window10068

overview

Window 7

Location 16,723,488 – 16,723,579
Length 91
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 86.78
Mean single sequence MFE -26.10
Consensus MFE -24.33
Energy contribution -24.33
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.93
SVM decision value 0.09
SVM RNA-class probability 0.578142
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16723488 91 + 23771897
GGAGGAGGGU-------AGAGCG-AUUGUAACGGUGGUGGCCCCUUUCAAGAAUUAUGGGUCUGUCAAUGUCGAAAGAGGGGCGACCCCAAAAGAGCUA
(((((.((((-------...((.-((((...)))).)).))))))))).........(((((.(((....((....))..))))))))........... ( -29.00)
>DroSec_CAF1 30889 91 + 1
GGGG--------AGGGUAGAGGGUAGAGUAACGGUGGUGGCCCCUUUCAAGAAUUAUGGGUCUGUCAAUGUCGAAAGAGGGGCGACCCCAAAAGAGCUA
....--------..(((.....((......))((.(((.((((((((...((....(((.....)))...))...)))))))).)))))......))). ( -24.80)
>DroSim_CAF1 35415 99 + 1
GGGGGAGGGUAGAGGAUAGAGGGUAGAGUAACGGUGGUGGCCCCUUUCAAGAGUUAUGGGUCUGUCAAUGUCGAAAGAGGGGCGACCCCAAAAGAGCUA
(..((.((((......((..(..........)..))...))))))..)...((((..(((((.(((....((....))..))))))))......)))). ( -24.50)
>consensus
GGGGGAGGGU__AGG_UAGAGGGUAGAGUAACGGUGGUGGCCCCUUUCAAGAAUUAUGGGUCUGUCAAUGUCGAAAGAGGGGCGACCCCAAAAGAGCUA
................................((.(((.((((((((...((....(((.....)))...))...)))))))).))))).......... (-24.33 = -24.33 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,723,488 – 16,723,579
Length 91
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 86.78
Mean single sequence MFE -19.84
Consensus MFE -19.60
Energy contribution -19.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.99
SVM decision value 2.10
SVM RNA-class probability 0.987871
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16723488 91 - 23771897
UAGCUCUUUUGGGGUCGCCCCUCUUUCGACAUUGACAGACCCAUAAUUCUUGAAAGGGGCCACCACCGUUACAAU-CGCUCU-------ACCCUCCUCC
.(((.....((((((.((((((..(((((...((.......))......))))))))))).))).))).......-.)))..-------.......... ( -20.32)
>DroSec_CAF1 30889 91 - 1
UAGCUCUUUUGGGGUCGCCCCUCUUUCGACAUUGACAGACCCAUAAUUCUUGAAAGGGGCCACCACCGUUACUCUACCCUCUACCCU--------CCCC
..........(((((.((((((..(((((...((.......))......))))))))))).))).))....................--------.... ( -19.60)
>DroSim_CAF1 35415 99 - 1
UAGCUCUUUUGGGGUCGCCCCUCUUUCGACAUUGACAGACCCAUAACUCUUGAAAGGGGCCACCACCGUUACUCUACCCUCUAUCCUCUACCCUCCCCC
..........(((((.((((((..(((((...((.......))......))))))))))).))).))................................ ( -19.60)
>consensus
UAGCUCUUUUGGGGUCGCCCCUCUUUCGACAUUGACAGACCCAUAAUUCUUGAAAGGGGCCACCACCGUUACUCUACCCUCUA_CCU__ACCCUCCCCC
..........(((((.((((((..(((((...((.......))......))))))))))).))).))................................ (-19.60 = -19.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:29 2006