Locus 6274

Sequence ID 3L_DroMel_CAF1
Location 16,719,893 – 16,719,984
Length 91
Max. P 0.947692
window10064

overview

Window 4

Location 16,719,893 – 16,719,984
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -17.74
Consensus MFE -14.76
Energy contribution -16.04
Covariance contribution 1.28
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 1.37
SVM RNA-class probability 0.947692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16719893 91 + 23771897
AAUCAUUUGUCAUUGUUGGCAUUUUCGCCAUUUGCCAAAUAAUUUGGCACCCUCGCCAGCCGUGAAUUACAUAUGCAUGAUUUUUUCCCAU
((((((...((((.((((((......((((..(........)..))))......)))))).))))...........))))))......... ( -19.04)
>DroSec_CAF1 27261 91 + 1
AAUCAUUUGUCAUUGUUGGCAUUUUCGCCAUUUGCCAAAUAAUUUGGCACCCUCGCCAGCCGUGAAUUACAUAUGCAUGAUUUUUUCCCAU
((((((...((((.((((((......((((..(........)..))))......)))))).))))...........))))))......... ( -19.04)
>DroSim_CAF1 31722 91 + 1
AAUCAUUUGUCAUUGUUGGCAUUUUCGCCAUUUGCCAAAUAAUUUGGCACCCUCGCCAGCCGUGAAUUACAUAUGCAUGAUUUUUUCCCAU
((((((...((((.((((((......((((..(........)..))))......)))))).))))...........))))))......... ( -19.04)
>DroEre_CAF1 28006 80 + 1
AAUCAUUUGUCAU----------UUUGCCAUUUGCCAAAUAAUUUGGCGCCCUCGCCAGACGUGAAUUACAUAUGCAUGAUUU-UUCCCAU
((((((..(((((----------((.((.....)).))))....(((((....))))))))(((.....)))....)))))).-....... ( -13.10)
>DroYak_CAF1 30106 91 + 1
AAUCAUUUGUCAUUGCUGGCAUUUUCGCCAUUUGCCAAAUAAUUUGGCACCCUCGCCAGACGUGAAUUACAUAUGCAUGAUUUUUUCCCAU
........(((((.((((((......))))..((((((.....))))))...((((.....)))).........))))))).......... ( -18.50)
>consensus
AAUCAUUUGUCAUUGUUGGCAUUUUCGCCAUUUGCCAAAUAAUUUGGCACCCUCGCCAGCCGUGAAUUACAUAUGCAUGAUUUUUUCCCAU
((((((...((((.((((((......((((..(........)..))))......)))))).))))...........))))))......... (-14.76 = -16.04 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:25 2006