| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,717,470 – 16,717,566 |
| Length | 96 |
| Max. P | 0.880278 |
| Location | 16,717,470 – 16,717,566 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 73.24 |
| Mean single sequence MFE | -32.15 |
| Consensus MFE | -15.13 |
| Energy contribution | -16.50 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16717470 96 + 23771897 UGAAAAUGUUACCCAUGGCAG------CGGCAGCUUCUGCUGCAGUUGCAUCCGCU--GGAUGCAGUUGGUC--GUAUAGAUGCAUAUAGUCUCCAGAUGAUAUGU ..............(((((.(------((((((...)))))))..((((((((...--))))))))...)))--))......((((((.(((....))).)))))) ( -30.70) >DroSec_CAF1 24855 98 + 1 UGAAAAUAUUCCCCACGGCAG------CGGCAGCUUCUGCUGCAGUUGCAUCCGCU--GGAUGCAGUUGGUCUGGUAUGGAUGCAUAUAGUCUCCAGAUGAUCUGU ............(((((((((------(.(((((....))))).)))))...)).)--))..((((.(.((((((...((((.......)))))))))).).)))) ( -34.20) >DroSim_CAF1 29323 98 + 1 UGAAAAUGUUCCCCACGGCAG------CGGCAGCUUCUGCUGCAGUUGCAUCCGCU--GGAUGCAGUUGGUCUGGUAUGGAUGCAUAUAGUCUCCAGAUGAUCUGU ............(((((((((------(.(((((....))))).)))))...)).)--))..((((.(.((((((...((((.......)))))))))).).)))) ( -34.20) >DroEre_CAF1 25809 90 + 1 UCAAAUCGUUCCCCGCGGCAG------C------UUCUGCUGCAGAUGCAUCCGCU--GGAUGCAGUUGGUC--GUUGGGAUGCAUAUAGUUUCCAGAUGAUCUCU ..............(((((((------.------..)))))))...(((((((...--)))))))...((((--(((.(((.((.....)).))).)))))))... ( -32.00) >DroYak_CAF1 27754 84 + 1 UGAAAAAGUUCUCCGCAGCAG------C------------GGCAGUUGCAUCCGCU--GGAUGCAGUUGGUC--GUUUGGGUACAUAUAGUUUCCAGAUGAUCUGC ..........((((((....)------)------------)).))((((((((...--))))))))..((((--(((((((.((.....)).)))))))))))... ( -30.50) >DroAna_CAF1 22584 100 + 1 UGAAAACAUAGCUCGAGGCGUAGAAUCUGGCAGAAGCUUCUGCAGUUGCAUCUGCUUUGGUCGC-UUUGGCCU-CUUUGGAGUGUUGUGUUUUUUAGAUGAU---- .(((((((((((((((((((....(((.((((((.((..........)).))))))..))))))-))))).((-(....))).)))))))))))........---- ( -31.30) >consensus UGAAAAUGUUCCCCACGGCAG______CGGCAGCUUCUGCUGCAGUUGCAUCCGCU__GGAUGCAGUUGGUC__GUAUGGAUGCAUAUAGUCUCCAGAUGAUCUGU ................(((...........((((....))))(((((((((((.....)))))))))))))).....((((.((.....)).)))).......... (-15.13 = -16.50 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:24 2006