Locus 6270

Sequence ID	3L_DroMel_CAF1
Location	16,710,486 – 16,710,578
Length	92
Max. P	0.844574

overview

Window 7

Location	16,710,486 – 16,710,578
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	92.10
Mean single sequence MFE	-22.00
Consensus MFE	-16.64
Energy contribution	-17.44
Covariance contribution	0.80
Combinations/Pair	1.07
Mean z-score	-2.15
Structure conservation index	0.76
SVM decision value	0.76
SVM RNA-class probability	0.844574
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16710486 92 - 23771897
GCUCUUAAAGUAAUUGUAUCUGAUGAUUUCGGUAUUGCCAGAACAUCGGGCAAUAAACACUGUCUUGGUGUUUUCAAUGAUUUUAUUAGCUU
(((..((((((.((((..(((((((.((..((.....))..)))))))))....(((((((.....))))))).)))).))))))..))).. ( -24.70)
>DroSec_CAF1 17882 91 - 1
GCUCUUAAAGUAAUUGUAUCUGAUGAUUUCGCUAUUGCCAGAACAUCGGGCCAUAAACACUGU-UUGGUGUUUUCAAUGAUUUUAUUAGCUU
(((..((((((.((((..(((((((.(((.((....)).))).)))))))....(((((((..-..))))))).)))).))))))..))).. ( -24.60)
>DroSim_CAF1 18730 91 - 1
GCUCUUAAAGUAAUUGUAUCUGAUGAUUUCGCUAUUGCCAGAACAUCGGGCCAUAAACACUGU-UUGGUGUUUUCAAUGAUUUUAUUAGCUU
(((..((((((.((((..(((((((.(((.((....)).))).)))))))....(((((((..-..))))))).)))).))))))..))).. ( -24.60)
>DroEre_CAF1 17982 88 - 1
GCUCUUAAAGUAAUUGUAUCUG---AUUUCGAUAUUGCCAGAACAUCGGGCAAUAAACACUGU-UUGGUGUUUUCAAUGGUAUCAUUAGCUC
(((............(((((..---.....)))))(((((((((((((((((........)))-)))))))))....))))).....))).. ( -19.30)
>DroYak_CAF1 19803 88 - 1
GCUCUUAAAGUAAUUGUAUCUG---AUUGCGAUAUUGCCUGAACAUCGAGUAAUAAACACUGU-UUGGUGUUUUCAAUGGUUUCAUUAGCUU
(((......((((((......)---)))))((....(((.((((((((((((........)))-))))))))).....))).))...))).. ( -16.80)
>consensus
GCUCUUAAAGUAAUUGUAUCUGAUGAUUUCGAUAUUGCCAGAACAUCGGGCAAUAAACACUGU_UUGGUGUUUUCAAUGAUUUUAUUAGCUU
(((..((((((.((((................(((((((.(.....).)))))))((((((.....))))))..)))).))))))..))).. (-16.64 = -17.44 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:19 2006