Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,860,236 – 1,860,329 |
Length | 93 |
Max. P | 0.598994 |
Location | 1,860,236 – 1,860,329 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -31.92 |
Consensus MFE | -27.40 |
Energy contribution | -27.18 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.17 |
Mean z-score | -1.54 |
Structure conservation index | 0.86 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1860236 93 + 23771897 CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUAUCGUAGUCGAACAGCUCGAAGUCGUAUCUGUGGGG-----AGG-------AAUUU ((.....(((((((......)))))))...((..(((((((.....(((.(((.(((......)))))).))))))))))..)).-----.))-------..... ( -33.90) >DroSec_CAF1 144 93 + 1 CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUAUCGUAGUCGAACAGCUCGAAGUCGUAUCUGUGGGG-----AGC-------AAUUU ........((((((......))))))((..((..(((((((.....(((.(((.(((......)))))).))))))))))..)).-----.))-------..... ( -35.60) >DroSim_CAF1 21 93 + 1 CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUAUCGUAGUCGAACAGCUCGAAGUCGUAUCUGUGGGU-----AAA-------AGUUA ...(((((((((((......)))))....(((..(((((((.....(((.(((.(((......)))))).))))))))))..)))-----.))-------)))). ( -35.60) >DroEre_CAF1 37 100 + 1 CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUAUCGUAGUCGAACAGCUCAAAGUCGUAUCUGUGGGG-----AAAAACAAAUUAUUU .......(((((((......)))))))...((..(((((((..((((...(((....)))....))...))..)))))))..)).-----............... ( -29.50) >DroYak_CAF1 21 93 + 1 CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUGUCGUAGUCGAACAGCUCAAAGUCGUAUCUGUGGGU-----AAA-------UAUUU .......(((((((......)))))))..(((..(((((((..((...(((((....)).)))......))..)))))))..)))-----...-------..... ( -32.20) >DroAna_CAF1 21 101 + 1 CAGGACUGCCGGCCUCGUCGGGCUGGGCCACCUGCAGAUAUUCCUGGAUGUCAUAGUCGAACAGCUCAAAGUCGUAUCUGAAGAACACAGAAAAAUA----AGAU ((((....(((((((....)))))))....))))(((((((..((.(((......)))((.....))..))..))))))).................----.... ( -24.70) >consensus CCGGACUUUCGGCCUCAUCCGGCCGGGCAACCUGCAGAUACUCCUGGAUAUCGUAGUCGAACAGCUCAAAGUCGUAUCUGUGGGG_____AAA_______AAUUU ........((((((......))))))....(((((((((((..((.(((......)))((.....))..))..)))))))))))..................... (-27.40 = -27.18 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:07 2006