Locus 6269

Sequence ID 3L_DroMel_CAF1
Location 16,701,961 – 16,702,063
Length 102
Max. P 0.917125
window10056

overview

Window 6

Location 16,701,961 – 16,702,063
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.84
Mean single sequence MFE -22.62
Consensus MFE -18.50
Energy contribution -18.58
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.82
SVM decision value 1.11
SVM RNA-class probability 0.917125
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16701961 102 + 23771897
UGGCCCGGCAUUCUUGGCAUCGUUUCAAAGAAAAACCAAAUCAAUCCACACUAAAAAAGUCAGAAUGCCUUAGUCUCAUUUUCCGACACUUAACGUGUCCAU
.(((..((((((((.(((........................................)))))))))))...))).........(((((.....)))))... ( -19.80)
>DroSec_CAF1 9114 102 + 1
UGGCCCGGCAUUCUUGGCAUCGUUUCAAAGAAAAACCAAAUCAAUCCACACUAAACAAGUCAGAAUGCCGUAGUCUCAUUUUCCGACACUUAACGUGUCCAU
.(((.(((((((((.(((...((((...........................))))..))))))))))))..))).........(((((.....)))))... ( -22.63)
>DroSim_CAF1 9459 102 + 1
UGGCUCGGCAUUCUUGGCAUCGUUUCAAAGAAAAACCAAAUCAAUCCACACCAAACAAGUCAGAAUGCCGUAGUCUCAUUUUCCGACACUUAACGUGUCCAU
.(((((((((((((.(((...((((...........................))))..)))))))))))).)))).........(((((.....)))))... ( -25.93)
>DroEre_CAF1 9322 102 + 1
UGGCCUGGCAUUCUUGGCAUCGUUUCAAAGAAAAACCGAGUCAAUCCGCAGUAAACAAGUCAGAAUGCAGCAGUCUUAUUUUCCGACACUUAACGUGUCCAU
.(((...(((((((.(((.(((((((...))))...)))((......)).........))))))))))....))).........(((((.....)))))... ( -20.30)
>DroYak_CAF1 10715 102 + 1
UGGCCUGGCAUUCUUGGCAUCGAUUCAAAGAAAAACCAAAUCAAUCGGCAGUAAACAAGUCAGAAUGCUGCCGUCUUAUUUUCCGACACUUAACGUGUCCAU
.(((..((((((((.(((.((((((.................))))))..(....)..))))))))))))))............(((((.....)))))... ( -24.43)
>consensus
UGGCCCGGCAUUCUUGGCAUCGUUUCAAAGAAAAACCAAAUCAAUCCACACUAAACAAGUCAGAAUGCCGUAGUCUCAUUUUCCGACACUUAACGUGUCCAU
.(((..((((((((.(((........................................)))))))))))...))).........(((((.....)))))... (-18.50 = -18.58 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:18 2006