Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,700,543 – 16,700,648 |
Length | 105 |
Max. P | 0.984072 |
Location | 16,700,543 – 16,700,648 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 73.64 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -12.97 |
Energy contribution | -13.33 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.30 |
Structure conservation index | 0.41 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16700543 105 - 23771897 AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC-CGUAAUGGGAUGCAA-UAUU-------UGCAUCGAUUUGCAUCGCAUGUCCAC ...(((((((((((.(((((.........))))))))))).(((((((((.(.((((...-.)))).).((((((.-....-------))))))))))))))).)))))..... ( -35.20) >DroPse_CAF1 8000 107 - 1 AUUUAUAGAAGUCUCCGCUUGAAGAUUUGUGGCCUGAACU-AUGCAAAUUAGCUU------UGUAAUUGGAGGCUACUAUGAGUGCCGUGCCAGUGGUGGCAUCGCAUGUCCAC ..((((((.((((((((((...........))).......-.((((((.....))------))))...))))))).))))))((((.((((((....)))))).))))...... ( -33.90) >DroSec_CAF1 7697 105 - 1 ACUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUGACGGC-CGUAAUGGGAUGCAA-UAUG-------UGCAACGAUUUGCAUCGCAUGUCCAC ...(((((((((((.(((((.........))))))))))).(((((((((.........(-(......)).((((.-....-------))))..))))))))).)))))..... ( -29.90) >DroSim_CAF1 8060 105 - 1 AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC-CGUAAUGGGAUGCAA-UAUG-------UGCAACGAUUUGCAUCGCAUGUCCAC ...(((((((((((.(((((.........))))))))))).(((((((((.(.((((...-.)))).)...((((.-....-------))))..))))))))).)))))..... ( -30.60) >DroYak_CAF1 9230 88 - 1 AUUUAUGCGCU---------------UUGUGGUCAGAAGU-AUGCAAAUUAGUUUACGGCCCGCAAUGCGAUGCAA-CAUC-------A--CUCGAUUGGCAUCGCAUGUCCAC ...(((((((.---------------((((((.(....((-(.((......)).))).).)))))).))(((((..-.(((-------.--...)))..))))))))))..... ( -27.20) >consensus AUUUAUGCGGUUCUUGGCUAAUGAUUUUGUGGUCAGAACCAAUGCAAAUUACUUUACGGC_CGUAAUGGGAUGCAA_UAUG_______UGCAACGAUUUGCAUCGCAUGUCCAC ............................((((.((...(((.(((.................))).)))(((((((.....................)))))))...)).)))) (-12.97 = -13.33 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:17 2006