Locus 6266

Sequence ID 3L_DroMel_CAF1
Location 16,691,104 – 16,691,194
Length 90
Max. P 0.747497
window10052

overview

Window 2

Location 16,691,104 – 16,691,194
Length 90
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.66
Mean single sequence MFE -27.43
Consensus MFE -16.93
Energy contribution -18.02
Covariance contribution 1.08
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.62
SVM decision value 0.47
SVM RNA-class probability 0.747497
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16691104 90 - 23771897
UCGCCUGGUUCCCGUGGCCACCAGCCAUCAGUUUGUCACUCGAAACUGGAAUCGAGUUUUCGUGCCCCCCGCCACG---GUGGCCACUUAUC--C-------
.....((((..(((((((.....(((..((((((........))))))(((.......)))).)).....))))))---)..))))......--.------- ( -28.30)
>DroPse_CAF1 12271 102 - 1
CGCACUGGUGCCACCUCCCACCAGCUAUCAGUUUGUGGCACGCAAUUGGAAUCGUUUCUAUGUGCCAACAACCACUGGUGUGGCCACCUAUCACCCACCAGC
....((((((........))))))......(.((((((((((....(((((....))))))))))).)))).).((((((.((..........)))))))). ( -31.90)
>DroSec_CAF1 12687 90 - 1
UCGCCUGGUUCCCGUGGCCACCAGCCAUCAGUUUGUCACUCGAAACUGGAAUCGAGUUUUCGUGCCCCCCGCCACG---GUGGCCACUUAUC--C-------
.....((((..(((((((.....(((..((((((........))))))(((.......)))).)).....))))))---)..))))......--.------- ( -28.30)
>DroEre_CAF1 13026 90 - 1
CCGCCUGGUUCCCGUGGCCACCAGCCAUCAGUUUGUCACUCGAAACUGGAAUCGCGUCAUCGUGCCUCCUACCACU---GUGGCCACUUAUC--C-------
.............((((((((.((.....(((((........)))))(((..((((....))))..))).....))---)))))))).....--.------- ( -25.80)
>DroYak_CAF1 12294 90 - 1
CCGCCUGGUUCCCGUGGCCACCAGCCAUCAGUUUGUCACUCGAAACUGGAAUCGCGUACUCGUGCCUCCCACCACG---CUGGCCACUUAUC--C-------
..(((.((((((.(((((.....))))).(((((........)))))))))))((((....(((.....))).)))---).)))........--.------- ( -23.90)
>DroAna_CAF1 10007 90 - 1
CGCUGGAGUGCCACUGGCCACCAGCCAUCAGUUUGUCACCCGGAACUGGAACCGCUUCUAUGUGCCCACUCCCCCA---GUGGCCACCUAUC--C-------
.(((((.(.(((...)))).)))))..(((((((........)))))))............(((.(((((.....)---)))).))).....--.------- ( -26.40)
>consensus
CCGCCUGGUUCCCGUGGCCACCAGCCAUCAGUUUGUCACUCGAAACUGGAAUCGCGUCUUCGUGCCCCCCACCACG___GUGGCCACUUAUC__C_______
.............((((((((......(((((((........)))))))............(((........)))....))))))))............... (-16.93 = -18.02 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:14 2006