Locus 6261

Sequence ID 3L_DroMel_CAF1
Location 16,681,098 – 16,681,218
Length 120
Max. P 0.710549
window10045

overview

Window 5

Location 16,681,098 – 16,681,218
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.78
Mean single sequence MFE -44.31
Consensus MFE -37.65
Energy contribution -37.07
Covariance contribution -0.58
Combinations/Pair 1.26
Mean z-score -1.78
Structure conservation index 0.85
SVM decision value 0.37
SVM RNA-class probability 0.710549
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16681098 120 - 23771897
GUGCAGGGACUUACCCUGGAUCUGCUGGCGCGCCAUCUCAAUCUCCUUUUUCUUUAGCUCGAAAACUACCUGGAAGAGAUCGCGCAUGGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
....((((.....))))((((.....(((((((.(((((....(((.(((((........)))))......))).))))).))))..(((((((........))))))))))..)))).. ( -45.00)
>DroVir_CAF1 548 120 - 1
GUGCAGGGAUUUGCCUUGGAUCUGCUGGCGCGCCAUUUCGAUCUCCUUUUUCUUCAGCUCGAAGACGACCUGGAAGAGAUCGCGCAUGGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
(..(((((....(((..((...(((((((((((.(((((....(((.((.(((((.....))))).))...))).))))).))))...)))))))...)).)))......)))))..).. ( -46.20)
>DroGri_CAF1 1513 120 - 1
GUGGAGAGCCUUGCCUUGGAUCUGCUGGCGUGCCAUCUCGAUCUCCUUCUUCUUCAGCUCGAAGACGACCUGGAAGAGAUCGCGCAUGGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
..((.(.(((..(((..((...(((((((((((.(((((....(((.((.(((((.....))))).))...))).))))).))))...)))))))...)).))).)))).))........ ( -48.20)
>DroWil_CAF1 21329 120 - 1
AUGCAAGGAUUUGCCUUGAAUUUGCUGGCGUGCCAUCUCAAUUUCUUUUUUCUUUAACUCAAAAACCACCUGAAAGAGAUCUCGCAUAGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
..((((((....(((.......(((((((((((.(((((..((((..........................)))))))))...)))).)))))))((....))..)))..)))))).... ( -33.57)
>DroMoj_CAF1 551 120 - 1
GUGCAUGGUCUUGCCCUGGAUCUGCUGGCGUGCCAUUUCGAUCUCUUUCUUUUUCAGCUCGAAGACGACCUGGAAGAGAUCGCGCAUGGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
(..(((((((..(((..((...(((((((((((.....((((((((......(((((.(((....))).))))))))))))).)))).)))))))...)).))).)))))...))..).. ( -47.60)
>DroAna_CAF1 337 120 - 1
GUGGAGGGACUUGCCCUGGAUCUGCUGGCGCGCCAUCUCGAUCUCCUUCUUCUUGAGCUCGAAGACCACCUGGAAGAGGUCGCGCAUUGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
..((((((.((.(((..((...(((((((((((.(((((........(((((........)))))((....))..))))).))))...)))))))...)).))).))...)))..))).. ( -45.30)
>consensus
GUGCAGGGACUUGCCCUGGAUCUGCUGGCGCGCCAUCUCGAUCUCCUUCUUCUUCAGCUCGAAGACGACCUGGAAGAGAUCGCGCAUGGCCAGCACCACCUGGCUGGCCGCCUUGUCCGU
....((((.....))))((((.....(((((((.(((((..(((...(((((........)))))......))).))))).))))..(((((((........))))))))))..)))).. (-37.65 = -37.07 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:07 2006