Locus 626

Sequence ID 3L_DroMel_CAF1
Location 1,856,634 – 1,856,749
Length 115
Max. P 0.640180
window963

overview

Window 3

Location 1,856,634 – 1,856,749
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -32.52
Consensus MFE -20.82
Energy contribution -21.38
Covariance contribution 0.56
Combinations/Pair 1.31
Mean z-score -1.63
Structure conservation index 0.64
SVM decision value 0.22
SVM RNA-class probability 0.640180
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1856634 115 - 23771897
AACUUCGAUAUGAUAUUUGUGUUCAAGGAGUACAAUAAGAAGGUUGCCAUGGUGAACGCCAUUCCUAUGAACAUGCUGGAUCACGUGAAGGAGUGGCUCAAGUAAGUU--CAUCUGC---
..((((..(((..(((((.(.....).)))))..))).))))...((...((((((((((((((((.....((((........)))).)))))))))........)))--)))).))--- ( -28.60)
>DroVir_CAF1 14231 118 - 1
AACUUUGACAUGAUCUUUGUGUUUAAGGAGUACAACAAGAAGGUGGCCAUGGUCAAUGCCAUACCCAUGAACAUGUUGGAUCACGUCAAGGAGUGGUUAAAGUGAGUG--GCCUCUUUAU
..(((((((.((((((.((((((((.((.((((.....)..((((((....)))...))).))))).))))))))..)))))).)))))))((.(((((.......))--))).)).... ( -34.60)
>DroGri_CAF1 11184 118 - 1
AACUUUGACAUGAUCUUCGUGUUCAAGGAGUACAUCAGGAAGGUGGCAAUGGUUAAUGCCAUACCUAUGAACAUGCUCGAUCACGUCAAGGAGUGGCUGAAGUGAGUU--CCGCAGCUAA
..(((((((.(((((..(((((((((((.((.((((.....)))))).(((((....))))).))).))))))))...))))).)))))))..((((((..(......--)..)))))). ( -42.80)
>DroWil_CAF1 14007 118 - 1
AAUUUUGAUAUGAUUUUCGUGUUCAAAGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUACCAAUGAACAUGCUGGACCAUGUUAAGGAGUGGCUCAAGUAAGUC--AAACCGCGAC
....((((((((.(((.((((((((....(.....).......(((..(((((....))))).))).))))))))..))).))))))))((..(((((......))))--)..))..... ( -28.70)
>DroMoj_CAF1 10164 118 - 1
AACUUUGACAUGAUCUUUGUGUUCAAGGAGUACAACAAAAAGGUGGCAAUGGUGAAUGCAAUACCUAUGAAUAUGCUAGAUCACGUCAAGGAAUGGUUGAAGUGAGUG--AUGUCUAAAU
..(((((((.((((((..(((((((.(.....).......((((((((........)))..))))).)))))))...)))))).))))))).................--.......... ( -27.80)
>DroAna_CAF1 9701 116 - 1
AACUUCGACAUGAUAUUUGUCUUCAAGGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUCCCCAUGAACAUGCUGGACCACGUCAAGGAGUGGCUCAAGUACGUGGUCUCCUU----
......((((.......))))...((((((...........((((((.((.....)))))))).(((((....(((((..((((........))))..).))))))))).))))))---- ( -32.60)
>consensus
AACUUUGACAUGAUCUUUGUGUUCAAGGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUACCUAUGAACAUGCUGGAUCACGUCAAGGAGUGGCUCAAGUAAGUG__CACCCGC_A_
..(((((((.((((((.((((((((.((.((...((......)).)).(((((....)))))..)).))))))))..)))))).)))))))............................. (-20.82 = -21.38 +   0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:06 2006