Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,856,634 – 1,856,749 |
Length | 115 |
Max. P | 0.640180 |
Location | 1,856,634 – 1,856,749 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -20.82 |
Energy contribution | -21.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.31 |
Mean z-score | -1.63 |
Structure conservation index | 0.64 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1856634 115 - 23771897 AACUUCGAUAUGAUAUUUGUGUUCAAGGAGUACAAUAAGAAGGUUGCCAUGGUGAACGCCAUUCCUAUGAACAUGCUGGAUCACGUGAAGGAGUGGCUCAAGUAAGUU--CAUCUGC--- ..((((..(((..(((((.(.....).)))))..))).))))...((...((((((((((((((((.....((((........)))).)))))))))........)))--)))).))--- ( -28.60) >DroVir_CAF1 14231 118 - 1 AACUUUGACAUGAUCUUUGUGUUUAAGGAGUACAACAAGAAGGUGGCCAUGGUCAAUGCCAUACCCAUGAACAUGUUGGAUCACGUCAAGGAGUGGUUAAAGUGAGUG--GCCUCUUUAU ..(((((((.((((((.((((((((.((.((((.....)..((((((....)))...))).))))).))))))))..)))))).)))))))((.(((((.......))--))).)).... ( -34.60) >DroGri_CAF1 11184 118 - 1 AACUUUGACAUGAUCUUCGUGUUCAAGGAGUACAUCAGGAAGGUGGCAAUGGUUAAUGCCAUACCUAUGAACAUGCUCGAUCACGUCAAGGAGUGGCUGAAGUGAGUU--CCGCAGCUAA ..(((((((.(((((..(((((((((((.((.((((.....)))))).(((((....))))).))).))))))))...))))).)))))))..((((((..(......--)..)))))). ( -42.80) >DroWil_CAF1 14007 118 - 1 AAUUUUGAUAUGAUUUUCGUGUUCAAAGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUACCAAUGAACAUGCUGGACCAUGUUAAGGAGUGGCUCAAGUAAGUC--AAACCGCGAC ....((((((((.(((.((((((((....(.....).......(((..(((((....))))).))).))))))))..))).))))))))((..(((((......))))--)..))..... ( -28.70) >DroMoj_CAF1 10164 118 - 1 AACUUUGACAUGAUCUUUGUGUUCAAGGAGUACAACAAAAAGGUGGCAAUGGUGAAUGCAAUACCUAUGAAUAUGCUAGAUCACGUCAAGGAAUGGUUGAAGUGAGUG--AUGUCUAAAU ..(((((((.((((((..(((((((.(.....).......((((((((........)))..))))).)))))))...)))))).))))))).................--.......... ( -27.80) >DroAna_CAF1 9701 116 - 1 AACUUCGACAUGAUAUUUGUCUUCAAGGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUCCCCAUGAACAUGCUGGACCACGUCAAGGAGUGGCUCAAGUACGUGGUCUCCUU---- ......((((.......))))...((((((...........((((((.((.....)))))))).(((((....(((((..((((........))))..).))))))))).))))))---- ( -32.60) >consensus AACUUUGACAUGAUCUUUGUGUUCAAGGAGUACAACAAAAAGGUGGCCAUGGUCAAUGCCAUACCUAUGAACAUGCUGGAUCACGUCAAGGAGUGGCUCAAGUAAGUG__CACCCGC_A_ ..(((((((.((((((.((((((((.((.((...((......)).)).(((((....)))))..)).))))))))..)))))).)))))))............................. (-20.82 = -21.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:06 2006