Locus 6259

Sequence ID 3L_DroMel_CAF1
Location 16,671,410 – 16,671,527
Length 117
Max. P 0.588275
window10043

overview

Window 3

Location 16,671,410 – 16,671,527
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 88.50
Mean single sequence MFE -31.00
Consensus MFE -25.92
Energy contribution -25.76
Covariance contribution -0.16
Combinations/Pair 1.13
Mean z-score -1.40
Structure conservation index 0.84
SVM decision value 0.11
SVM RNA-class probability 0.588275
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16671410 117 + 23771897
UCGAGUCGGCCGCAUUUUUGGCCCAGAACCAGGCCAUGAUACGCAUGUGGCUGAACCCUAAUAUGCUGAUCUCCUAGGCAGCUCAAUCAAUUAACAAUCAAAAAUUGAUCAUUUAGU
.....((((((((((((.(((((........))))).)).....))))))))))...((((...((((.((.....))))))...(((((((..........)))))))...)))). ( -30.70)
>DroSec_CAF1 39032 117 + 1
UCGAGUCAGCCGCAUUUUUGGCCCAGAACCAGGCCAUGAUACGCAUGUGGCUGAAUCCCAACAUGCUGAUCUCCUAGGCCGCUCAAUCAAUUACCAAUCAAAAAUUGAUCAUUUAGU
..((((..(((.......(((((........))))).(((..((((((((.......)).))))))..))).....))).)))).(((((((..........)))))))........ ( -30.20)
>DroSim_CAF1 39116 117 + 1
UCGAGUCAGCCGCAUUUUUGGCCCAGAACCAGGCCAUGAUACGCAUGUGGCUGAAUCCCAACAUGCUGAUCUCCUAGGCCGCUCAAUCAAUUACCAAUCAAAAAUUGAUCAUUUAGU
..((((..(((.......(((((........))))).(((..((((((((.......)).))))))..))).....))).)))).(((((((..........)))))))........ ( -30.20)
>DroEre_CAF1 39126 112 + 1
UGGAGUCGGCCGCUAUUUUGGCCCAGAAUCAGGCCAUGAUGCGCAAGUGGCUUAACCCCAGCAUGCUGAUCUCCUAGGCAGCUCA----AUUACCAAUGAA-AAUUUACCAUUUAGU
.(((((((((.((.(((.(((((........))))).)))))((..(.((.....)))..))..))))).))))......(((.(----((....(((...-.)))....))).))) ( -27.60)
>DroYak_CAF1 40310 112 + 1
UGGAGUCGGCCGCCAUUUUGGCCCAGAAUCAGGCCAUGAUGCGCAAGUGGCUGAACCCCAGCAUGCUGAUCUCCUAGGCAGCUCG----AUUAGCAAUGAA-AAUUUAUCAGUUAGU
.(((((((((.((((((.(((((........))))).)))).)).....((((.....))))..))))).))))...((((((.(----((....(((...-.))).))))))).)) ( -36.30)
>consensus
UCGAGUCGGCCGCAUUUUUGGCCCAGAACCAGGCCAUGAUACGCAUGUGGCUGAACCCCAACAUGCUGAUCUCCUAGGCAGCUCAAUCAAUUACCAAUCAAAAAUUGAUCAUUUAGU
..((((..(((.......(((((........))))).(((..((((((((.......)).))))))..))).....))).))))................................. (-25.92 = -25.76 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:05 2006