Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,670,708 – 16,670,828 |
Length | 120 |
Max. P | 0.999346 |
Location | 16,670,708 – 16,670,828 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -40.72 |
Consensus MFE | -34.22 |
Energy contribution | -34.78 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -3.07 |
Structure conservation index | 0.84 |
SVM decision value | 3.53 |
SVM RNA-class probability | 0.999346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16670708 120 + 23771897 UGCGGCGUAAGCCCCUCAGUGAUUACAUGAUGCUGGAGGAACAGCCAUCUACCUCCAGUCGUCCAACCACAUCCUCUUCCUAUUUAUCGGACCAGGAUCGUCCGAUGAGUUAUGCCGCUG .(((((((((........(((.......(((((((((((............))))))).))))....)))............((((((((((.......))))))))))))))))))).. ( -43.30) >DroSec_CAF1 38324 120 + 1 UGCGGCGUAAGCCACUCAGUGAUUACAUGAUGCUGGAGGAACAUCCAUCUACCUCCAGUCGUCCAACCACAUCCUCUUCCUAUUUAUCGGACCAGGAUCCUCCGAUGAGUUAUGCCGCUG .((((((((....((((((((.......(((((((((((............))))))).))))....)))(((((..(((........)))..))))).......))))))))))))).. ( -42.40) >DroSim_CAF1 38402 120 + 1 UGCGGCGUAAGCCACUCAGUGAUUACAUGAUGCUGGAGGAACAUCCAUCUACCUCCAGUCGUCCAACCACAUCCUCUUCCUAUUUAUCGGACCAGGAUCCUCCGAUGAGUUAUGCCGCUG .((((((((....((((((((.......(((((((((((............))))))).))))....)))(((((..(((........)))..))))).......))))))))))))).. ( -42.40) >DroEre_CAF1 38430 120 + 1 UGCGGCGUAAGCCACUAAGCGAUUACAUGAUGCUGGAGGAGCAACCAUUUGCAUCCAGUCGUCCAACCACAUCCUCCUCCCAUCUAUCGGACCAGGAUCCUCCGAUGAGUUACGCAGCUG .(((((....))).....(((...((..((((..((((((((((....)))).....((.(.....).)).))))))...))))(((((((.........))))))).))..))).)).. ( -37.80) >DroYak_CAF1 39617 120 + 1 UGCGGCAUAAGCCCCUAAGCGACUACAUGAUGCUGGAGGAGCAACCUUCUGCAGCCAGUCGUCCAACCACAUCCUCUUCCUAUUUAUCGGACCAAGAUCCUCCGAUGAGUUAUGCUGCUG .(((((((((........((((((.......((((.(((((....))))).)))).))))))....................(((((((((.........)))))))))))))))))).. ( -37.70) >consensus UGCGGCGUAAGCCACUCAGUGAUUACAUGAUGCUGGAGGAACAACCAUCUACCUCCAGUCGUCCAACCACAUCCUCUUCCUAUUUAUCGGACCAGGAUCCUCCGAUGAGUUAUGCCGCUG .(((((((((..................(((((((((((............))))))).))))...................(((((((((.........)))))))))))))))))).. (-34.22 = -34.78 + 0.56)
Location | 16,670,708 – 16,670,828 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -43.96 |
Consensus MFE | -34.92 |
Energy contribution | -35.36 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.79 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16670708 120 - 23771897 CAGCGGCAUAACUCAUCGGACGAUCCUGGUCCGAUAAAUAGGAAGAGGAUGUGGUUGGACGACUGGAGGUAGAUGGCUGUUCCUCCAGCAUCAUGUAAUCACUGAGGGGCUUACGCCGCA ..(((((.((((((.((((...(((((..(((........)))..))))).((((((.(.((((((((((((....)))..)))))))..)).).)))))))))).))).))).))))). ( -46.50) >DroSec_CAF1 38324 120 - 1 CAGCGGCAUAACUCAUCGGAGGAUCCUGGUCCGAUAAAUAGGAAGAGGAUGUGGUUGGACGACUGGAGGUAGAUGGAUGUUCCUCCAGCAUCAUGUAAUCACUGAGUGGCUUACGCCGCA ..(((((...(((((.......(((((..(((........)))..)))))(((((((.(.(((((((((............)))))))..)).).))))))))))))(.....)))))). ( -44.90) >DroSim_CAF1 38402 120 - 1 CAGCGGCAUAACUCAUCGGAGGAUCCUGGUCCGAUAAAUAGGAAGAGGAUGUGGUUGGACGACUGGAGGUAGAUGGAUGUUCCUCCAGCAUCAUGUAAUCACUGAGUGGCUUACGCCGCA ..(((((...(((((.......(((((..(((........)))..)))))(((((((.(.(((((((((............)))))))..)).).))))))))))))(.....)))))). ( -44.90) >DroEre_CAF1 38430 120 - 1 CAGCUGCGUAACUCAUCGGAGGAUCCUGGUCCGAUAGAUGGGAGGAGGAUGUGGUUGGACGACUGGAUGCAAAUGGUUGCUCCUCCAGCAUCAUGUAAUCGCUUAGUGGCUUACGCCGCA ..((.((((((((((((...((((....))))....))))))..((..(((((((((((.....(((.((((....)))))))))))))..)))))..))(((....))))))))).)). ( -42.80) >DroYak_CAF1 39617 120 - 1 CAGCAGCAUAACUCAUCGGAGGAUCUUGGUCCGAUAAAUAGGAAGAGGAUGUGGUUGGACGACUGGCUGCAGAAGGUUGCUCCUCCAGCAUCAUGUAGUCGCUUAGGGGCUUAUGCCGCA ..((.(((((((((...((((((((((..(((........)))..))))((..((..(....)..))..)).........))))))(((..(.....)..)))...))).)))))).)). ( -40.70) >consensus CAGCGGCAUAACUCAUCGGAGGAUCCUGGUCCGAUAAAUAGGAAGAGGAUGUGGUUGGACGACUGGAGGUAGAUGGAUGUUCCUCCAGCAUCAUGUAAUCACUGAGUGGCUUACGCCGCA ..(((((.(((..(........(((((..(((........)))..)))))(((((((.(.(((((((((............)))))))..)).).))))))).....)..))).))))). (-34.92 = -35.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:04 2006