Locus 6256

Sequence ID 3L_DroMel_CAF1
Location 16,664,718 – 16,664,828
Length 110
Max. P 0.884500
window10034

overview

Window 4

Location 16,664,718 – 16,664,828
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 96.34
Mean single sequence MFE -24.24
Consensus MFE -22.52
Energy contribution -22.68
Covariance contribution 0.16
Combinations/Pair 1.09
Mean z-score -1.37
Structure conservation index 0.93
SVM decision value 0.93
SVM RNA-class probability 0.884500
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16664718 110 - 23771897
UCCCAUUGAUUGGAAUCUACAAGUUUUUCAAUUUGCUCGAACGCGCUUUCAGUUUCGUUCAAUUGAGUUAGGGGACUUCCUUUCUUUAUUUGACUUUAGCUGAUGGCUAA
.......((((((((..........)))))))).((......))(((.((((((....((((..(((..((((....))))..)))...))))....)))))).)))... ( -24.10)
>DroSec_CAF1 32454 109 - 1
UCCCAUUGAUUGAAAUCUACAAGUUUUUCAAUUUGCUCGAACGCGCUUUCAGUUUCGUUCAAUUGAAUUAGGGG-CUUCCUUUCUUUAUUUGAGUUUAGCUGAUGGCUAA
.......((((((((..........)))))))).((......))(((.((((((...(((((.((((..((((.-...))))..)))).)))))...)))))).)))... ( -25.40)
>DroSim_CAF1 32519 109 - 1
UCCCAUUGAUUGAAAUCUACAAGUUUUUCAAUUUGCUCGAACGCGCUUUCAGUUUCGUUCAAUUGAAUUAGGGG-CUUCCUUUCUUUAUUUGAGUUUAGCUGAUGGCUAA
.......((((((((..........)))))))).((......))(((.((((((...(((((.((((..((((.-...))))..)))).)))))...)))))).)))... ( -25.40)
>DroEre_CAF1 32516 108 - 1
UCCCAUUGAUUGGAAUCUACAAGUU-UUCAAUUUGCUUGAACGCGCUUUCAGUUUCGUUCAAUUGAGUUAGGGG-CUUCCUUUCUUUAUUUGAGUUUAGCUGAUGACUAA
..(((.....))).........((.-(((((.....))))).))....((((((...(((((..(((..(((..-...)))..)))...)))))...))))))....... ( -21.10)
>DroYak_CAF1 33629 108 - 1
UCCCAUUGAUUGGAAUCUACAAGUU-UUCAAUUUGCUUGAACGCGCUUUCAGUUUCGUUCAAUUGAGUUAGGGG-CUUCCUUUCUUUAUUUGAGUUUAGCUGGUGGCUAA
..(((.....))).........((.-(((((.....))))).))(((.((((((...(((((..(((..(((..-...)))..)))...)))))...)))))).)))... ( -25.20)
>consensus
UCCCAUUGAUUGGAAUCUACAAGUUUUUCAAUUUGCUCGAACGCGCUUUCAGUUUCGUUCAAUUGAGUUAGGGG_CUUCCUUUCUUUAUUUGAGUUUAGCUGAUGGCUAA
.......((((((((..........)))))))).((......))(((.((((((...(((((.((((..((((.....))))..)))).)))))...)))))).)))... (-22.52 = -22.68 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:56 2006