Locus 6254

Sequence ID 3L_DroMel_CAF1
Location 16,657,823 – 16,657,916
Length 93
Max. P 0.796515
window10028

overview

Window 8

Location 16,657,823 – 16,657,916
Length 93
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.28
Mean single sequence MFE -25.56
Consensus MFE -23.82
Energy contribution -24.02
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.93
SVM decision value 0.60
SVM RNA-class probability 0.796515
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16657823 93 + 23771897
CACAUUGCCGAAGCUGAAUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUAC---CAAGC
((((((.(((..(((((...(((((((((.....)))).)).)))...))))).....(((((.....)))))))).).)))))....---..... ( -24.70)
>DroSec_CAF1 25717 96 + 1
CACAUUGCCGAAGCUGAAUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUACCACCAAGC
((((((.(((..(((((...(((((((((.....)))).)).)))...))))).....(((((.....)))))))).).)))))............ ( -24.70)
>DroSim_CAF1 25652 96 + 1
CACAUUGCCGAAGCUGAAUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUACCACCAAGC
((((((.(((..(((((...(((((((((.....)))).)).)))...))))).....(((((.....)))))))).).)))))............ ( -24.70)
>DroEre_CAF1 25511 93 + 1
CACAUUGCCCAAGCUGAAUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUAC---CAAGC
(((((..(((..(((((...(((((((((.....)))).)).)))...))))).....(((((.....))))).)))..)))))....---..... ( -26.20)
>DroYak_CAF1 26618 96 + 1
CACAUUGCCGAAGCUGAGUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUACCACCAAGC
((((((.(((..((((((((..(((((((.....)))).)))..))).))))).....(((((.....)))))))).).)))))............ ( -27.50)
>consensus
CACAUUGCCGAAGCUGAAUCCAUGUUGCAAUUUAUGCAGGCGAUGACAUCAGUGGAAAUUCGCACAAAGCGAACGGGACAUGUGAUACCACCAAGC
((((((.(((..(((((...(((((((((.....)))).)).)))...))))).....(((((.....)))))))).).)))))............ (-23.82 = -24.02 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:51 2006