Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,648,575 – 16,648,666 |
Length | 91 |
Max. P | 0.590915 |
Location | 16,648,575 – 16,648,666 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.46 |
Mean single sequence MFE | -25.29 |
Consensus MFE | -17.15 |
Energy contribution | -16.93 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.99 |
Structure conservation index | 0.68 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.590915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16648575 91 + 23771897 CCAGCAAAAGAGUAUACCCAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUUUACU---------UUGCUUUAUCGUUCAAUAUGCGAUGCA ..(((((((((((.....(((.(.((((((((((....))))))))))).)))...)))))..)---------))))).((((((.......)))))).. ( -25.90) >DroEre_CAF1 21652 96 + 1 CCGCGAAAAGAGUAUGCCAAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU----UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUACA .((((...(((((.(((..((.(.((((((((((....))))))))))).))))).))))----)((........))..............))))..... ( -23.90) >DroYak_CAF1 22730 96 + 1 CCGCGAAAAGGGUAUACCCUAAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU----UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUGCA ..((....((((....)))).(((((((((((((....))))))))).))))))..((..----(((........((......)).......)))..)). ( -26.06) >consensus CCGCGAAAAGAGUAUACCCAGAGUGCAACAAUAAUGCAUUGUUGUUGCCGCUGCAAGCUU____UGCUUUACUUUGCUUUAUCGUUCAAUAUGCGUUGCA ...........(((((.....(((((((((((((....))))))))).))))..((((.................))))..........)))))...... (-17.15 = -16.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:50 2006