Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,848,913 – 1,849,008 |
Length | 95 |
Max. P | 0.942698 |
Location | 1,848,913 – 1,849,008 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.53 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -30.02 |
Energy contribution | -28.38 |
Covariance contribution | -1.64 |
Combinations/Pair | 1.36 |
Mean z-score | -1.65 |
Structure conservation index | 0.88 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1848913 95 - 23771897 CUCGCAGCAAUGUGACCGUUCCUCGGGGGUGGUUAAAUACUGUGUGGGGGUGGCUGCCAGCCUGCUUGGUAUAUUUAAGCACACAUCAUUGUUCA ...(.(((((((((((((..((...))..))))))......((((((((.(((...))).)))((((((.....)))))).))))))))))))). ( -33.00) >DroSec_CAF1 2321 95 - 1 CUCGCAGCAGUGUGACCGUUCCACGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCAUGGUAUAUUUAAGCACACAUCGCUGUUCA ...(((((.(((((((((..((...))..))))...((((((((..(((((....)))..))..)))))))).........))))).)))))... ( -37.50) >DroSim_CAF1 2337 95 - 1 CUCGCAGCAGUGUGACCGUUCCUCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCAUGGUAUAUUUAAGCACACAUCGCUGUUCA ...(((((.(((((((((..((...))..))))...((((((((..(((((....)))..))..)))))))).........))))).)))))... ( -37.50) >DroEre_CAF1 2332 95 - 1 CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUAUUGUGUGGGGGUGGCUGCUGGUCUGUUUGGUAUAUUUAGGCAUACAUCACUGUUCA ((((((.(((((((((((..((...))..)))))..))))))))))))(((((.((...(((((...........)))))...)))))))..... ( -29.80) >DroYak_CAF1 2315 95 - 1 CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUUCCAGCUUGUUUGGUAUAUUGAAGCAUAUGUCACUGUUUA (.(((((((...((((((..((...))..))))))..))))))).)..((((((.....((((.............))))....))))))..... ( -32.72) >consensus CUCGCAGCAGUGUGACCGUUCCGCGGGGGUGGUUAAAUGCUGUGUGGGGGUGGCUGCCAGCCUGCUUGGUAUAUUUAAGCACACAUCACUGUUCA ...(.(((((((((((((..((...))..)))))).....(((((.(((.(((...))).)))((((((.....))))))))))).)))))))). (-30.02 = -28.38 + -1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:04 2006