Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,625,884 – 16,625,987 |
Length | 103 |
Max. P | 0.923563 |
Location | 16,625,884 – 16,625,987 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.05 |
Mean single sequence MFE | -31.92 |
Consensus MFE | -17.02 |
Energy contribution | -17.14 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.00 |
Structure conservation index | 0.53 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16625884 103 + 23771897 GCUGAAUCCAGGGACACUCUGAGUCCUGUAAGCUACCCCGUUAUUACAUCACUUUUCUCACAGUGUUCUGGGAGCACAU-GAGUGAGGGGGUGGCUGUAACGGA ......(((.(((((.......)))))((.(((((((((((....)).((((((..(((.(((....))).))).....-)))))).)))))))))...))))) ( -38.30) >DroSec_CAF1 10509 94 + 1 GCAGAAUCUAGAGACAGUCUGAGUUUUGUAA----------GAUUAUAUCACUUUUCUCGCAGUGUUCCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA ((((((..((((.....))))..))))))..----------..(((((((((.(..(((((.((((((...)))))).....)))))..))))).))))).... ( -26.10) >DroSim_CAF1 10823 83 + 1 ACAGAAACUAGAGACCCCGU---------------------CAUUACAUCACUUUUCUCGCAGUGUUUCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA ................((((---------------------...((((((((.(..(((((.((((((...)))))).....)))))..))))).)))))))). ( -22.80) >DroEre_CAF1 10969 104 + 1 GCAGAUUCAAGCGACUGUCUUAGAUUUGUAAGCUACCCCGUCAUUACAUCACUUUUCUCUCAGUGUUUCGGGAGCACAUUGAGUGAGGGGGUGGCUGUAACAGA ((((((..((((....).)))..)))))).(((((((((.(((((.((........(((((........))))).....))))))).)))))))))........ ( -35.02) >DroYak_CAF1 10700 87 + 1 -------UAAGCGACUGUCU---------GAGCUACCCCGUCAUUACAUCA-UUUUCUCCCAGUGUUCCGGGAGCACAAUGAGUGAGGGGGUGGCUGUAACGGA -------.......((((..---------.(((((((((.((((....(((-((..(((((........)))))...))))))))).)))))))))...)))). ( -37.40) >consensus GCAGAAUCAAGAGACAGUCU_AG___UGUAAGCUACCCCGUCAUUACAUCACUUUUCUCGCAGUGUUCCGGGAGCACAUAGAGUGAGGGGGUGGCUGUAACGGA ...........................................(((((((((.(..(((((.((((((...)))))).....)))))..))))).))))).... (-17.02 = -17.14 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:44 2006