Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,621,089 – 16,621,196 |
Length | 107 |
Max. P | 0.633742 |
Location | 16,621,089 – 16,621,196 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -22.74 |
Energy contribution | -23.14 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.74 |
Structure conservation index | 0.73 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16621089 107 + 23771897 GGCUAGAAGUUUUCGGGCAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAGCCGUCAAUACUCAGACGAAAAGCAA----------CAAGCCAUCCAGUCAAAACAAUU ((((.(..((((((.(((....((((....).(((((((....))))))).)))....)))(((........)))).)))))..----------).))))................. ( -32.40) >DroSec_CAF1 5845 107 + 1 GGCUAGAAGUUUUGGGGCAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAGCCGUCAAUACUCAGACCAAAAGCAA----------CAAGCAAUCCAGUCAAAACAAUU ((((.((..((((((.((...))(((.((((..((((((....))))))(((......)))))))...)))...))))))((..----------...))..)).))))......... ( -31.50) >DroSim_CAF1 5927 107 + 1 GGCUAGAAGUUUUGGGGCAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAACCGUCAAUACUCAGACCAAAAGCAA----------CAAGCAAUCCAGUCAAAACAAUU ((((.((.(.((((((.....((((..((.(.(((((((....)))))))...).))..)))).....)))))).)....((..----------...))..)).))))......... ( -30.30) >DroEre_CAF1 6310 116 + 1 GGCUAGAAGUU-CGGGGUAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAGCUGUCAAUACUCAGACGAAACGCAAUCAUCAAGUCCCAGCAAUCCAGUCAAAACAAUU ((((.(.....-).((((..(((((((((((((((((((....)))))))((......))))))........((.((.......)).))..))))).)))))))))))......... ( -33.80) >DroYak_CAF1 5907 110 + 1 GGCUAGAAGUU-UCGGGUAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAGCUGUCAAUACUCA------AUACAAUCAUCAAGUCCAAACAAUCCAGUCAAAACAAUU ((((.((.(((-(.((.....((..(((((..(((((((....)))))))...(((.....)))........------......)))))..))))))))..)).))))......... ( -27.70) >consensus GGCUAGAAGUUUUGGGGCAAUGCGGGAUGACACACCUGCUGCAGCAGGUGGCCGAUAAGCCGUCAAUACUCAGACCAAAAGCAA__________CAAGCAAUCCAGUCAAAACAAUU ((((.((........(((....((((....).(((((((....))))))).)))....)))(((........)))..........................)).))))......... (-22.74 = -23.14 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:43 2006