Locus 6244

Sequence ID 3L_DroMel_CAF1
Location 16,614,124 – 16,614,219
Length 95
Max. P 0.739014
window10011

overview

Window 1

Location 16,614,124 – 16,614,219
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -21.10
Consensus MFE -16.52
Energy contribution -15.36
Covariance contribution -1.16
Combinations/Pair 1.23
Mean z-score -1.75
Structure conservation index 0.78
SVM decision value 0.44
SVM RNA-class probability 0.739014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16614124 95 - 23771897
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUUAACCUGUGUUAAAUGCAUUUGAAUAUUCCUUCAAAUUUCUUGCUGCUUUUUGGUAACUUAACAAA
....((((((((.((((((((((..(((.....)))...)))))))(((((((......)))))))..))).)((((....)))).))))))).. ( -20.70)
>DroSec_CAF1 22176 95 - 1
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUUAACCUGUGUUGAAUGCAUUUGAAUAUUCCUUCAAAUUUCUUGCUGCUUUUUGGUAACUUAGCAAA
....((((((((.((((((((((..(((.....)))...)))))))(((((((......)))))))..))).)((((....)))).))))))).. ( -20.80)
>DroSim_CAF1 21407 95 - 1
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUUAACCUGUGUUGAAUGCAUUUGAAUAUUCCUUCAAAUUUCUUGCUGCUUUUUGGUAACUUAGCAAA
....((((((((.((((((((((..(((.....)))...)))))))(((((((......)))))))..))).)((((....)))).))))))).. ( -20.80)
>DroEre_CAF1 22168 95 - 1
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUAAACCUGUGUUGAAUGCAUUUGAAUAUUCCUUCAAUUCCUCUGCUGCUUUUUGGUAACUUAGAAAA
.(((((.((((((((.(((((((..(((.....)))...)))))))..(((((......))))))))))))).((((....))))...))))).. ( -22.60)
>DroYak_CAF1 22344 95 - 1
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUAAUCCUGUGUUAAAUGCAUUUGAAUAUUCCUUCGAUUCCUCUGCUGCUUUUUGGUCACUUAGAAAA
.(((((.((((((((.(((((((..(((.....)))...)))))))..(((((......)))))))))))))..(((....)))....))))).. ( -20.60)
>consensus
AUUCUGUUAGGGGAAGGCAUUUAUUUAGUUAACCUGUGUUGAAUGCAUUUGAAUAUUCCUUCAAAUUUCUUGCUGCUUUUUGGUAACUUAGCAAA
.......(((((((..(((((((..(((.....)))...)))))))..(((((......))))).))))))).((((....)))).......... (-16.52 = -15.36 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:33 2006