Locus 6243

Sequence ID 3L_DroMel_CAF1
Location 16,608,509 – 16,608,622
Length 113
Max. P 0.576990
window10010

overview

Window 0

Location 16,608,509 – 16,608,622
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -21.44
Consensus MFE -12.52
Energy contribution -13.08
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.58
SVM decision value 0.09
SVM RNA-class probability 0.576990
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16608509 113 + 23771897
------AUACAUUUUUCAAAGUGUAA-AAUGUAUUAUGGUCAAAAUAAAUUGCAAACCAAUCCAGGUAACUGUAAAUGGUUAUCAAACAACACUUGUUAAAUUCCAAAAUAUUUUGAUGA
------(((((((((.(.....).))-)))))))....(((((((((..(((((.(((......)))...))))).(((......((((.....)))).....)))...))))))))).. ( -20.20)
>DroSec_CAF1 16630 105 + 1
UGAUA-GUGCAUUUUUCGAAGUGUAA-AAUGUAUUAUGGUCAAAAUA-------------UGCAGGUAACUGUAAAUGGUUAUCAAACAACACUUGUUAAAUUCCAAAAUAUUUUGUUGA
..(((-(((((((((.........))-))))))))))...(((((((-------------(...(((((((......))))))).((((.....))))..........)))))))).... ( -20.70)
>DroSim_CAF1 15866 105 + 1
UGAUA-GUGCAUUUUUCGAAGUGUAA-AAUGUAUUAUGGUCAAAAUA-------------UGCAGGUAACUGUAAAUGGUUAUCAAACAACACUUGUAAAAUUCCAAAACAUUUUGAUGA
..(((-(((((((((.........))-)))))))))).((((((((.-------------(((((....)))))..(((.......(((.....)))......)))....)))))))).. ( -21.82)
>DroEre_CAF1 16728 110 + 1
UCAUAUGUACAUUUUUCGAAGUGUA------AAUUAUGGUCAAAAUAAAUGGCA-CCCAAUCCAAGGAACUGUAAAAUGUUAUCAAA---CACUUGUUAAAUUCCAAAAUAUUUUGAUGG
.((((..(((((((....)))))))------...))))(((((((((..(((..-......))).((((...(((..((((....))---))....)))..))))....))))))))).. ( -20.80)
>DroYak_CAF1 16788 116 + 1
UCAUAUGUACAUUUUUCGAAGUGUAUUUAUUUAUUAUGGUCAAAAUAAAUUGCA-CCGAAUGAAGGUAACUGUAAAAUGUUAUCAAA---CACUUGUUAAAUUGCAAAAUAUUUUGAUGA
..(((.((((((((....)))))))).)))........(((((((((..(((((-.........((((((........)))))).((---(....)))....)))))..))))))))).. ( -23.70)
>consensus
UCAUA_GUACAUUUUUCGAAGUGUAA_AAUGUAUUAUGGUCAAAAUAAAU_GCA__C_AAUGCAGGUAACUGUAAAUGGUUAUCAAACAACACUUGUUAAAUUCCAAAAUAUUUUGAUGA
.......(((((((....))))))).............(((((((((.................((((((........)))))).........(((........)))..))))))))).. (-12.52 = -13.08 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:32 2006