Locus 6242

Sequence ID 3L_DroMel_CAF1
Location 16,607,737 – 16,607,844
Length 107
Max. P 0.631645
window10009

overview

Window 9

Location 16,607,737 – 16,607,844
Length 107
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.81
Mean single sequence MFE -27.79
Consensus MFE -24.34
Energy contribution -24.30
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.24
Structure conservation index 0.88
SVM decision value 0.20
SVM RNA-class probability 0.631645
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16607737 107 - 23771897
CCAAAACGAAAUGUGUAUCUUCCAUGCUUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACAGAGAUUGAAAGUUGGAGGAGUCG---------UCGCUGAUCA
.......((...(((..(((((((.((((((((((((((.(((((..................))))).)))))...))))))))))))))))....---------.)))...)). ( -27.77)
>DroSec_CAF1 15767 104 - 1
CCAAAACGAAAUGUGUAUCUUCCAUGCUUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACAGAGAUUGAAAGUUGGAGGAGU------------CGCUGAUCA
.......((...(((..(((((((.((((((((((((((.(((((..................))))).)))))...))))))))))))))))..------------)))...)). ( -28.67)
>DroSim_CAF1 14992 104 - 1
CCAAAACGAAAUGUGUAUCUUCCAUGCUUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACAGAGAUUGAAAGUUGGAGGAGU------------CGCUGAUCA
.......((...(((..(((((((.((((((((((((((.(((((..................))))).)))))...))))))))))))))))..------------)))...)). ( -28.67)
>DroEre_CAF1 15819 104 - 1
CCAAAACGAAAUGUGUAUCUUCCAUGCAUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACGGAGAUUGAAAGUUGGAGGAG------------UCGCUGAUCA
.......((...(((..(((((((.((.(((((((((((.(((((..................))))).))))...))))))).))))))))).------------.)))...)). ( -24.27)
>DroYak_CAF1 15958 116 - 1
CCAAAACGAAAUGUGUAUCUUCCAUGCUUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACGGAGAUUGAAAGUUGGAGGAGUCGUAGUCGGAGUCGCUGAUCA
.....((((........(((((((.((((((((((((((.(((((..................))))).))))...))))))))))))))))).)))).(((((.....))))).. ( -29.57)
>consensus
CCAAAACGAAAUGUGUAUCUUCCAUGCUUUCAGUUGUUAUUGUCGUUUUUAUACAAUUUCCUUUGGCGCUGACAGAGAUUGAAAGUUGGAGGAGU___________UCGCUGAUCA
.......((...(((..(((((((.((((((((((((((.(((((..................))))).)))))...))))))))))))))))..............)))...)). (-24.34 = -24.30 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:31 2006