| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,603,093 – 16,603,189 |
| Length | 96 |
| Max. P | 0.996301 |
| Location | 16,603,093 – 16,603,189 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 91.72 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -26.55 |
| Energy contribution | -27.17 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.06 |
| Mean z-score | -4.03 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.996301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16603093 96 + 23771897 A--------UAUUUUGUCUGGCCGCCAUGAAAAUGAUUGAUCGAUUGAGUCAGCAAUUAACAGAGUUGUUACUCAAAUUUGAUUUGUUUAUUUUCAGUGGUCAA .--------.........(((((((..(((((((((..((((((((((((.(((((((.....)))))))))))))..))))))...)))))))))))))))). ( -32.70) >DroSec_CAF1 11138 96 + 1 A--------UAUUUUGUCUGGCCGCCAUGAAAAUGAUUGAUCGAUUGAGUCAGCAAUUAACAGAGUUGUUACUCAAAUUUGAUUUGUUUAUUUUCACUGGUCAA .--------.........((((((...(((((((((..((((((((((((.(((((((.....)))))))))))))..))))))...))))))))).)))))). ( -29.40) >DroEre_CAF1 11156 104 + 1 AUAAUUUUAUAUUUUGUCUGGCCGCCAUGAAAAUGAUUGAUCGAUUGAGUCAGCAAUUAACAAAGUUGUUUCUCAAAUUUGAUUUGUUUAUUUUCAUUGGUCAA ..................((((((..((((((((((..(((((((((((..(((((((.....))))))).)))))..))))))...)))))))))))))))). ( -28.50) >DroYak_CAF1 11261 104 + 1 AUAAUUUUAUAUUUUGUCUGGCUGCCAUGAAAAUGAUUGAUCGAUUGAGUCAGCAAUUAACAAAGUUGUUUCUCAAAUUUGAUUUGUUUAUUUUUAUUGGUCAA ..................((((((..((((((((((..(((((((((((..(((((((.....))))))).)))))..))))))...)))))))))))))))). ( -23.40) >consensus A________UAUUUUGUCUGGCCGCCAUGAAAAUGAUUGAUCGAUUGAGUCAGCAAUUAACAAAGUUGUUACUCAAAUUUGAUUUGUUUAUUUUCAUUGGUCAA ..................((((((..((((((((((..((((((((((((.(((((((.....)))))))))))))..))))))...)))))))))))))))). (-26.55 = -27.17 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:28 2006