| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,599,937 – 16,600,028 |
| Length | 91 |
| Max. P | 0.818273 |
| Location | 16,599,937 – 16,600,028 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Mean single sequence MFE | -12.88 |
| Consensus MFE | -10.64 |
| Energy contribution | -9.95 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16599937 91 + 23771897 AAAGAAAAUCAUAAUCACAAUCAAUAGGUUAUAUUCCAAGUACUUCAUUAUCAUUUGAGAAGUACUCGAAAUUUCCAAUAAUCUUUUAAUG (((((.....((((((..........)))))).(((..((((((((.(((.....))))))))))).)))...........)))))..... ( -13.80) >DroSec_CAF1 7982 70 + 1 AAAGAAAAUCAUAAUCACACUCAAUAGGUUAUAUUCCAAGUACUUCAUUAUUGUUUAAGAAGUACUAAAG--------------------- ..........((((((..........))))))......((((((((.(((.....)))))))))))....--------------------- ( -11.40) >DroEre_CAF1 8034 91 + 1 GAACAAAACCAUAAUCACACUCAAUGGAAUAUAUUCGAGGUACUUCAUUAUUAUUUGAGAGGUGCUUGAAAUUUACAAUAAACUUUUAAAG ........((((...........))))......((((((.((((((.(((.....)))))))))))))))..................... ( -13.80) >DroYak_CAF1 8038 91 + 1 GAACAAAAUCAUAAUCACACUCAAUAGAAUAUAUGCGAGGUACUUCAUUAUUGUCUGAGAGGUGCUUGAAAGUUUCAAUAAACUCUUAAAG ...................(((.(((.....)))..)))(((((((.(((.....))))))))))((((.(((((....))))).)))).. ( -12.50) >consensus AAACAAAAUCAUAAUCACACUCAAUAGAAUAUAUUCCAAGUACUUCAUUAUUAUUUGAGAAGUACUUGAAAUUU_CAAUAAACUUUUAAAG ..........((((((..........))))))......((((((((.(((.....)))))))))))......................... (-10.64 = -9.95 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:27 2006