Locus 6237

Sequence ID 3L_DroMel_CAF1
Location 16,596,934 – 16,597,024
Length 90
Max. P 0.787627
window10003

overview

Window 3

Location 16,596,934 – 16,597,024
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 95.54
Mean single sequence MFE -17.83
Consensus MFE -17.67
Energy contribution -17.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.99
SVM decision value 0.58
SVM RNA-class probability 0.787627
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16596934 90 + 23771897
UAAGUAAUAG-AACACAACACAUGUACAGCGAACUAUGUAUGUAUAUGUAUGUACAUAUAUACAGUUAGCGGAUGGCUGACAUCAAAAGCG
..........-.................((....((((((((((((....))))))))))))..((((((.....)))))).......)). ( -20.50)
>DroSec_CAF1 4975 87 + 1
UAAGUAAUAGGAACACAACACAUGUACAGCGAACUAUGUAUGUAUAU----GUACAUAUAUACAGUUAGCGGAUGGAUGACAUCAAAAGCG
...((.......................((.(((((((((((((...----.)))))))))..)))).)).((((.....))))....)). ( -16.50)
>DroSim_CAF1 4613 87 + 1
UAAGUAAUAGGAACACAACACAUGUACAGCGAACUAUGUAUGUAUAU----GUACAUAUAUACAGUUAGCGGAUGGAUGACAUCAAAAGCG
...((.......................((.(((((((((((((...----.)))))))))..)))).)).((((.....))))....)). ( -16.50)
>consensus
UAAGUAAUAGGAACACAACACAUGUACAGCGAACUAUGUAUGUAUAU____GUACAUAUAUACAGUUAGCGGAUGGAUGACAUCAAAAGCG
...((.......................((.((((((((((((((......))))))))))..)))).)).((((.....))))....)). (-17.67 = -17.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:25 2006