Locus 6236

Sequence ID 3L_DroMel_CAF1
Location 16,588,643 – 16,588,760
Length 117
Max. P 0.665027
window10002

overview

Window 2

Location 16,588,643 – 16,588,760
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 86.32
Mean single sequence MFE -38.32
Consensus MFE -26.22
Energy contribution -28.64
Covariance contribution 2.42
Combinations/Pair 1.04
Mean z-score -3.48
Structure conservation index 0.68
SVM decision value 0.28
SVM RNA-class probability 0.665027
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16588643 117 - 23771897
AUGGCAUGAAAUCGGGGGCCAUCAAUACGGUUGGCACUCUUCCAGCCAAACUGGGCAACAAGCAGCCACCGGCUGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACUCCU
.(((..((...((((((((.........((((((.......))))))....(((.......((((((...)))))).......)))..))))))))....)))))............ ( -40.84)
>DroSec_CAF1 7259 117 - 1
AUGGCAUGAAAUCGGGGGCCAUCAAUACGGCUGGCACUCUUCCAGCCAAACUGGGCAACAAGCCGCCACCGGCUGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACUCCU
.(((..((...((((((((.........((((((.......)))))).....(((((....((((....)))))))))..........))))))))....)))))............ ( -43.90)
>DroSim_CAF1 7304 117 - 1
AUGGCAUGAAAUCGGGGGCCAUCAAUACGGCUGGCACUCUUCCAGCCAAACUGGGCAACAAGCCGCCACCGGCUGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACUCCU
.(((..((...((((((((.........((((((.......)))))).....(((((....((((....)))))))))..........))))))))....)))))............ ( -43.90)
>DroEre_CAF1 7203 117 - 1
ACGGGAUGAAAUCGGGGGCCACCAAUGCAGGUGGCACUCUUCCAGCCAAGCUGGGCAACAAGCCACCACCGGCAGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACCUCU
...((.((...((((((((......((.(((.(((.....((((((...))))))......(((......))).)))))).)).....))))))))....))))............. ( -42.30)
>DroYak_CAF1 7359 117 - 1
ACGGGAUGAAAUCGGGAGCCCCCAAUACUGGUGGCACUCUUCCAGCCAAGCUGGGCAACAAGCCACCACCGGCAGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACCUCU
...((.((...(((((.((.........(((((((.....((((((...))))))......)))))))..((.((...))))......)).)))))....))))............. ( -33.90)
>DroAna_CAF1 7063 99 - 1
ACGGGAUGAAA------------------GCUGGAACUCUGCCAGCCAAACCGGGCAACAAACCGCCACCGGCUGCCCCACCACCUCCGCCCCCGCAAUGCACCACUUCCAAUCCCU
..(((((..((------------------(.(((.....((((((((......(((........)))...))))).............((....))...)))))))))...))))). ( -25.10)
>consensus
ACGGCAUGAAAUCGGGGGCCAUCAAUACGGCUGGCACUCUUCCAGCCAAACUGGGCAACAAGCCGCCACCGGCUGCCCCUCCACCACCGCCCCCGAACUGCACCACCUCCAACCCCU
..((.......((((((((..........(((((.......)))))......(((((....(((......))))))))..........))))))))......))............. (-26.22 = -28.64 +   2.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:24 2006