| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,579,514 – 16,579,634 |
| Length | 120 |
| Max. P | 0.860606 |
| Location | 16,579,514 – 16,579,634 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.39 |
| Mean single sequence MFE | -44.28 |
| Consensus MFE | -38.37 |
| Energy contribution | -40.18 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16579514 120 + 23771897 AAGUCGACCAGCUUCGUCUGGUUGCGCAGCAGGAUGUCCAGAAUGGGCUUCGGCUUGUUGGGAUUGGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGAAUGUUGCGCGACUUU (((((((((((......))))))((((((((((..((((..((..(((....)))..)).))))...)).....((..((((.(.((.....))).))))..))..))))))))))))). ( -46.70) >DroPse_CAF1 3320 120 + 1 AAGUCGACCAGUUUCGUUUGGUUGCGCAGCAGGAUGUCCAGGAUCGGCUUCGGCUUGUUCGGAUUCGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGGAUGUUGCGCGACUUC (((((((((((......))))))((((((((.....(((((..((((((((((..((((((.........))))))..)))))).((.....))..)))).)))))))))))))))))). ( -45.40) >DroSec_CAF1 3450 120 + 1 AAGUCGACCAGCUUGGUCUGGUUGCGCAGCAGGAUGUCCAGAAUGGGCUUCGGCUUGUUGGGAUUGGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGAAUGUUGCGCGACUUU (((((((((((......))))))((((((((((..((((..((..(((....)))..)).))))...)).....((..((((.(.((.....))).))))..))..))))))))))))). ( -46.70) >DroEre_CAF1 3534 120 + 1 AAGUCGACCAGCUUGGUCUGAUUGCGCAGCAGGAUAUCCAGAAUGGGCUUCGGCUUGUUGGGAUUUGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGAAUGUUGCGCGACUUC (((((((((.....)))).....((((((((((..((((..((..(((....)))..)).))))...)).....((..((((.(.((.....))).))))..))..))))))))))))). ( -45.40) >DroYak_CAF1 3549 120 + 1 AAGUCGACCAGCUUUGUCUGGUUGCGUAGCAGGAUGUCCAGAAUGGGCUUCGGCUUGUUGGGAUUUGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGGAUGUUGCGCGAUUUC (((((((((((......))))))((((((((((..((((..((..(((....)))..)).))))...)).....((..((((.(.((.....))).))))..))..))))))))))))). ( -42.60) >DroAna_CAF1 3480 120 + 1 AAAUCGACCAGUUUCGAUUGAUUGCGCAGCAGGAUAUCCAGGAUGGGUUUCGGUUUGUUGGGAUUCGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGAAUGUUGCGCGACUUC .((((((......))))))..((((((((((((....))..((.((((((((((((...((..((((...))))..))....)))).)))))).))))........)))))))))).... ( -38.90) >consensus AAGUCGACCAGCUUCGUCUGGUUGCGCAGCAGGAUGUCCAGAAUGGGCUUCGGCUUGUUGGGAUUCGCCACGAACACCUUGAAGACGUGAAACGCCUCGAACUGAAUGUUGCGCGACUUC (((((((((((......))))))((((((((((..((((..((..(((....)))..)).))))...)).....((..((((.(.((.....))).))))..))..))))))))))))). (-38.37 = -40.18 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:22 2006