Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,579,366 – 16,579,474 |
Length | 108 |
Max. P | 0.945611 |
Location | 16,579,366 – 16,579,474 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -45.63 |
Consensus MFE | -24.85 |
Energy contribution | -28.52 |
Covariance contribution | 3.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.22 |
Structure conservation index | 0.54 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16579366 108 + 23771897 GCUGGAGUU------------GGAGCUGAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAGCGGCUUCAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCGUCGUUGAA ((.(((...------------(((((((((((((..((((((((..((......))..))))).)))..)))))))))))))....)))))....((((...(((......))).)))). ( -47.30) >DroPse_CAF1 3191 89 + 1 A------------------------------UU-GACCAUCCGUCGAUGGUCAACUAGGCCUCGGGCAGCGGUUUCAGCUCCUUUAUCUGCUUAAUCAGAUAGGCCUUCUCGUCGUUGAA .------------------------------((-(((((((....)))))))))..(((((..(((.(((.......)))))).((((((......)))))))))))............. ( -31.10) >DroSec_CAF1 3308 102 + 1 G------------------UUGGAGGUGAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAGCGGCUUCAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCGUCGUUGAA .------------------..((((.((((((((..((((((((..((......))..))))).)))..)))))))).))))..((((((......))))))(((......)))...... ( -40.90) >DroSim_CAF1 3324 120 + 1 GCUGGAGUUGGAGCUGGAGCUGGAGGUGAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAACGGCUUCAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCGUCGUUGAA ((((((((((((((((..(((.(((((..(((((((.((........)))))))))..))))).)))..)))))))))))))..((((((......)))))))))............... ( -59.50) >DroEre_CAF1 3374 120 + 1 GCUGGAGUUGGAGCUGAAGUCGGAGCUGAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAGCGGCUUAAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCGUCGUUAAA (((((((((.((((((..(((.(((((..(((((((.((........))))))))).)).))).)))..)))))).))))))..((((((......)))))))))............... ( -47.50) >DroYak_CAF1 3401 108 + 1 GCUGGAGUUGGAGCU------------GAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAGCGGCUUCAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCAUCGUUGAA ...((((..((((((------------(((((((..((((((((..((......))..))))).)))..)))))))))))))((((((((......)))))))).))))(((....))). ( -47.50) >consensus GCUGGAGUU____________GGAG_UGAAGUUGGAGCCGAGGUGGAGGUCCAACUAAGCCUCGGGCAGCGGCUUCAGCUCCUUUAUCUGCUUGAUCAGAUAGGCCUUCUCGUCGUUGAA .....................((((.((((((((..((((((((..((......))..))))).)))..)))))))).))))((((((((......))))))))................ (-24.85 = -28.52 + 3.67)
Location | 16,579,366 – 16,579,474 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -23.15 |
Energy contribution | -23.43 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.82 |
Structure conservation index | 0.63 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16579366 108 - 23771897 UUCAACGACGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUGAAGCCGCUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUCAGCUCC------------AACUCCAGC .........(((......((((((......))))))..((((((((((..(..(((.((((......(((....))))))))))..)..))))))))))------------..))).... ( -38.90) >DroPse_CAF1 3191 89 - 1 UUCAACGACGAGAAGGCCUAUCUGAUUAAGCAGAUAAAGGAGCUGAAACCGCUGCCCGAGGCCUAGUUGACCAUCGACGGAUGGUC-AA------------------------------U .............(((((((((((......)))))...(((((.......))).))..)))))).((((((((((....)))))))-))------------------------------) ( -32.30) >DroSec_CAF1 3308 102 - 1 UUCAACGACGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUGAAGCCGCUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUCACCUCCAA------------------C ......((.(.((((...((((((......))))))..((((((((((((.(.....).)))))((.(((....))).)))))))))..)))).).))...------------------. ( -32.00) >DroSim_CAF1 3324 120 - 1 UUCAACGACGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUGAAGCCGUUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUCACCUCCAGCUCCAGCUCCAACUCCAGC .........(((......((((((......))))))..(((((((.(((.(......((((...(((((((((........)).)))))))...))))).))).)))))))..))).... ( -41.10) >DroEre_CAF1 3374 120 - 1 UUUAACGACGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUUAAGCCGCUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUCAGCUCCGACUUCAGCUCCAACUCCAGC ...........((((...((((((......))))))..((((((((((((.(.....).))))))((((((((........)).))))))...))))))..)))).(((........))) ( -37.70) >DroYak_CAF1 3401 108 - 1 UUCAACGAUGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUGAAGCCGCUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUC------------AGCUCCAACUCCAGC .........(((......((((((......))))))..((((((((((..(..(((.((((......(((....))))))))))..)..))))------------))))))..))).... ( -38.60) >consensus UUCAACGACGAGAAGGCCUAUCUGAUCAAGCAGAUAAAGGAGCUGAAGCCGCUGCCCGAGGCUUAGUUGGACCUCCACCUCGGCUCCAACUUCA_CUCC____________AACUCCAGC .............(((((((((((......)))))...(((((.......))).))..))))))(((((((((........)).)))))))............................. (-23.15 = -23.43 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:21 2006