Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,578,603 – 16,578,707 |
Length | 104 |
Max. P | 0.953335 |
Location | 16,578,603 – 16,578,707 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.58 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -20.79 |
Energy contribution | -21.23 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -3.01 |
Structure conservation index | 0.83 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16578603 104 + 23771897 UGUGU--GUGUGUGUUGAAUGCUUUCUCU--CUCUUUUUCUUUCUCUUGCUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA ..(((--((((((.....)))).......--.......((((((....(((((..((((((((((((....)))))))))))).))))).......)))))).))))) ( -25.30) >DroSec_CAF1 2562 100 + 1 --------UGUGUGUUGAAUGCUUUCUCUCUCUCUUUUUCUUUCUCUUGAUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA --------.((((...(((....)))............((((((...((..((((((((((((((((....)))))))))))).))))..))....)))))).)))). ( -24.10) >DroEre_CAF1 2625 102 + 1 UGUGUGUGUGUGUUUUGAAUGCUUUCUCUCUCUCUCUUU------CUUGCUCUUUCUAUAUAUAUAUAUCAGUAUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA ....(((((((.(((((.(((..................------...(((((..((((((((((((....)))))))))))).))))).)))..))))).))))))) ( -25.45) >consensus UGUGU__GUGUGUGUUGAAUGCUUUCUCUCUCUCUUUUUCUUUCUCUUGCUCUUUCUAUAUAUAUAUAUCAGUGUAUAUAUAGUAGAGUCCAUGCCGAAGGAUGCACA ........(((((((((((....)))......................(((((..((((((((((((....)))))))))))).)))))...........)))))))) (-20.79 = -21.23 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:19 2006