Locus 6231

Sequence ID 3L_DroMel_CAF1
Location 16,577,357 – 16,577,447
Length 90
Max. P 0.595197
window9996

overview

Window 6

Location 16,577,357 – 16,577,447
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 87.55
Mean single sequence MFE -20.41
Consensus MFE -17.45
Energy contribution -17.09
Covariance contribution -0.36
Combinations/Pair 1.22
Mean z-score -1.58
Structure conservation index 0.85
SVM decision value 0.12
SVM RNA-class probability 0.595197
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16577357 90 - 23771897
UCAUAGUCGCGGCUG--------AUAAGUCGCUAAUUUUUGCAUAAUAUUAAGUAUAAGUCAAAACAAACGUGCGAAUUAUGUCAUGUAUUCGGCUAG
...(((((((((((.--------...)))))).......(((((.((((...((((..((........)))))).....)))).)))))...))))). ( -19.60)
>DroSec_CAF1 1362 90 - 1
UCCUAGUCGCGGCUG--------AUAAGUCGCAAGUUUUUGCAUAAUAUUAAGUAAAAGUCAAAACAAAGGUGCGAAUUAUGUCAUGUAUUCGACUAG
..(((((((..((((--------(((..(((((.(((((.((................)).))))).....)))))....))))).))...))))))) ( -22.19)
>DroSim_CAF1 1362 90 - 1
UCCUAGUCGCGGCUG--------AUAAGUCGCAAGUUUUUGCAUAAUAUUAAGUAUAAGUCAAAACAAAGGUGCGAAUUAUGUCAUGUAUUCGACUAG
..((((((((((((.--------...)))))).......(((((.((((...((((..((....))....)))).....)))).)))))...)))))) ( -23.20)
>DroEre_CAF1 1365 90 - 1
UUCUAGUCGCGGCUG--------AUAAGUCGCUAAUUUUUGCAUAAUAUUAAGUAUAAGUCAAAACAAAGGUGCAAAUUAUGUCAUGUUUUCGGCUAG
..((((((((((((.--------...)))))).....(((((((..........................)))))))...............)))))) ( -20.37)
>DroYak_CAF1 1366 90 - 1
AUCUAGUCGCGGCUG--------AUAAGUCGCUAAUUUUUGCAUAAUAUUAAGUAUAAGUCAAAACAAAGGUGCGAAUUAUGUCAUGUUUUCGGCUAG
..((((((((((((.--------...))))))........(((((((.....((((..((....))....))))..))))))).........)))))) ( -20.80)
>DroAna_CAF1 1350 96 - 1
UUCUAGUCGCGACUGUAAUUUUUAUCAGUUGCUAAUUUUUGCAUAAUAUUUAGAAUUAAUCAAAGCAA--GUUUUAAUUAUGUCAUGUUUUCGCCUAG
..((((.((((((((..........)))))))........(((((((...(((((((..........)--))))))))))))).........).)))) ( -16.30)
>consensus
UCCUAGUCGCGGCUG________AUAAGUCGCUAAUUUUUGCAUAAUAUUAAGUAUAAGUCAAAACAAAGGUGCGAAUUAUGUCAUGUAUUCGGCUAG
..((((((((((((............))))))........(((((((.....((((..............))))..))))))).........)))))) (-17.45 = -17.09 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:18 2006