| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,559,667 – 16,559,773 |
| Length | 106 |
| Max. P | 0.615412 |
| Location | 16,559,667 – 16,559,773 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.66 |
| Mean single sequence MFE | -39.87 |
| Consensus MFE | -26.05 |
| Energy contribution | -27.08 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16559667 106 - 23771897 CCACACUCUGCCA-GGCGGGAAAACAG----CGCCGCAGGGAGAAGCCAUCCCUGUCGGUGGCCGAAAUUCUAAAGUCAUCCUUCGUUGAGAAGGCUCGCCUGUUGGAAAG ......(((..((-((((((.......----(((((((((((.......)))))).)))))...................(((((.....)))))))))))))..)))... ( -43.00) >DroVir_CAF1 3113 100 - 1 CAACGUUGUGCAAAGGCGGUAAGAAUGAACCCGCCAGAAAGAGUAGCGUU--AUCUCCGUCGCGGACAUACUGAAGUCGUCCUUUGUGGAGAGGGCCCGUGU--------- .(((((((..(...(((((...........))))).....)..)))))))--........(((((((........)))(((((((....))))))).)))).--------- ( -27.20) >DroSec_CAF1 4463 106 - 1 CCACACUCUGCCA-GGCGGGAAAACAG----CGCCGCAGGGAGAAGCCCUCCCUGUCGGUGGCCGAAAUUCUAAAGUCCUCCUUCGUUGAGAAGGCUCGCCUGUUGGAAAA ......(((..((-((((((.......----((((((((((((.....))))))).)))))...................(((((.....)))))))))))))..)))... ( -45.80) >DroSim_CAF1 3013 106 - 1 CCACACUCUGCCA-GGCGGGAAAACAG----CGCCGCAGGGAGAAGCCCUCCCUGUCGGUGGCCGAAAUUCUAAAGUCCUCCUUCGUUGAGAAGGCUCGCCUGUUGGAAAA ......(((..((-((((((.......----((((((((((((.....))))))).)))))...................(((((.....)))))))))))))..)))... ( -45.80) >DroEre_CAF1 4237 106 - 1 CCACACUCUGCCA-GGCUGGAAAACAG----CGCCGCAGGGAGAAGCCAUCCCUGUCUGUGGCCGAAAUCCUAAAGUCCUCCUUCGUUGAGAAGGCUCGCCUGUUGGAGAA .....((((..((-(((.(((.....(----.((((((((.((.........)).)))))))))....))).........(((((.....)))))...)))))..)))).. ( -39.20) >DroYak_CAF1 3019 106 - 1 CCACACUCUGUCA-GGCUGGAAAACAG----CGCCGCAGGGAGAAGCCAUCCCUGUCUGUGGCCGAAAUCCUAAAGUCCUCCUUCGUUGAGAAGGCUCGCCUGUUGGAGAA .....(((((.((-(((.(((.....(----.((((((((.((.........)).)))))))))....))).........(((((.....)))))...))))).))))).. ( -38.20) >consensus CCACACUCUGCCA_GGCGGGAAAACAG____CGCCGCAGGGAGAAGCCAUCCCUGUCGGUGGCCGAAAUUCUAAAGUCCUCCUUCGUUGAGAAGGCUCGCCUGUUGGAAAA ......(((..((.((((((............((((((((((.......)))))))....))).................(((((.....)))))))))))))..)))... (-26.05 = -27.08 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:17 2006